CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P109S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3109P109SP927SnonsynCcaTca5545510.9945853044-3046
ORF1ab/nsp3109P109SP927SnonsynCcATcT55420.003610113044-3046
ORF1ab/nsp3109P109SP927SnonsynCcATcC55410.001805053044-3046

Details of the mutation P109S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3109P109SCcaTca551554All0.000105
ORF1ab/nsp3109P109SCcATcT2554All0
ORF1ab/nsp3109P109SCcATcC1554All0
ORF1ab/nsp3109P109SCcaTca112112B.1.1.70.0001
ORF1ab/nsp3109P109SCcaTca107107AY.1030.000664
ORF1ab/nsp3109P109SCcaTca3434AY.40.000053
ORF1ab/nsp3109P109SCcaTca3030B.1.617.20.000113
ORF1ab/nsp3109P109SCcaTca2323AY.30.000229
ORF1ab/nsp3109P109SCcaTca2323AY.50.000475
ORF1ab/nsp3109P109SCcaTca1919AY.1180.00119
ORF1ab/nsp3109P109SCcaTca1111AY.1000.000506
ORF1ab/nsp3109P109SCcaTca1111AY.1110.002015
ORF1ab/nsp3109P109SCcaTca1111AY.440.000067
ORF1ab/nsp3109P109SCcaTca910D.20.000675
ORF1ab/nsp3109P109SCcATcT110D.20.000075
ORF1ab/nsp3109P109SCcaTca88AY.430.000035
ORF1ab/nsp3109P109SCcaTca88B.1.1.3690.00357
ORF1ab/nsp3109P109SCcaTca88B.1.20.00007
ORF1ab/nsp3109P109SCcaTca66AY.230.000418
ORF1ab/nsp3109P109SCcaTca55AY.1190.000177
ORF1ab/nsp3109P109SCcaTca55AY.750.00028
ORF1ab/nsp3109P109SCcaTca55B.1.1.3740.011876
ORF1ab/nsp3109P109SCcaTca55B.1.2210.000355
ORF1ab/nsp3109P109SCcaTca55P.10.000079
ORF1ab/nsp3109P109SCcaTca44AY.1020.000106
ORF1ab/nsp3109P109SCcaTca44AY.150.008889
ORF1ab/nsp3109P109SCcaTca44B.1.1.710.024242
ORF1ab/nsp3109P109SCcaTca33A0.001161
ORF1ab/nsp3109P109SCcaTca23AY.1050.001286
ORF1ab/nsp3109P109SCcATcT13AY.1050.000643
ORF1ab/nsp3109P109SCcaTca33AY.140.000264
ORF1ab/nsp3109P109SCcaTca33AY.250.000018
ORF1ab/nsp3109P109SCcaTca33AY.4.20.000065
ORF1ab/nsp3109P109SCcaTca33AY.480.001395
ORF1ab/nsp3109P109SCcaTca33AY.980.000237
ORF1ab/nsp3109P109SCcaTca33B.10.000027
ORF1ab/nsp3109P109SCcaTca33B.1.360.000438
ORF1ab/nsp3109P109SCcaTca33B.1.5960.000261
ORF1ab/nsp3109P109SCcaTca33B.1.617.10.000387
ORF1ab/nsp3109P109SCcaTca33C.370.000348
ORF1ab/nsp3109P109SCcaTca22AY.1170.000169
ORF1ab/nsp3109P109SCcaTca22AY.260.000057
ORF1ab/nsp3109P109SCcaTca22AY.730.001331
ORF1ab/nsp3109P109SCcaTca22B.1.10.000036
ORF1ab/nsp3109P109SCcaTca22B.1.1.4110.029412
ORF1ab/nsp3109P109SCcaTca22B.1.1.5190.000079
ORF1ab/nsp3109P109SCcaTca22B.1.1600.000062
ORF1ab/nsp3109P109SCcaTca22B.1.2430.000139
ORF1ab/nsp3109P109SCcaTca22B.1.4270.000101
ORF1ab/nsp3109P109SCcaTca22B.1.4290.000047
ORF1ab/nsp3109P109SCcaTca22B.1.4360.002058
ORF1ab/nsp3109P109SCcATcC11AY.1090.00074
ORF1ab/nsp3109P109SCcaTca11AY.1200.000037
ORF1ab/nsp3109P109SCcaTca11AY.20.000356
ORF1ab/nsp3109P109SCcaTca11AY.290.000016
ORF1ab/nsp3109P109SCcaTca11AY.370.000316
ORF1ab/nsp3109P109SCcaTca11AY.390.000025
ORF1ab/nsp3109P109SCcaTca11AY.4.40.000409
ORF1ab/nsp3109P109SCcaTca11AY.4.50.000107
ORF1ab/nsp3109P109SCcaTca11AY.46.40.000165
ORF1ab/nsp3109P109SCcaTca11AY.500.000799
ORF1ab/nsp3109P109SCcaTca11AY.530.000288
ORF1ab/nsp3109P109SCcaTca11AY.740.000116
ORF1ab/nsp3109P109SCcaTca11AY.790.001211
ORF1ab/nsp3109P109SCcaTca11B.1.1.2160.00089
ORF1ab/nsp3109P109SCcaTca11B.1.1.3440.010753
ORF1ab/nsp3109P109SCcaTca11B.1.1.3890.006061
ORF1ab/nsp3109P109SCcaTca11B.1.1.390.00051
ORF1ab/nsp3109P109SCcaTca11B.1.1.4340.000349
ORF1ab/nsp3109P109SCcaTca11B.1.1.5060.037037
ORF1ab/nsp3109P109SCcaTca11B.1.1770.000013
ORF1ab/nsp3109P109SCcaTca11B.1.177.170.000821
ORF1ab/nsp3109P109SCcaTca11B.1.177.440.000519
ORF1ab/nsp3109P109SCcaTca11B.1.177.50.001242
ORF1ab/nsp3109P109SCcaTca11B.1.177.650.000665
ORF1ab/nsp3109P109SCcaTca11B.1.2340.000132
ORF1ab/nsp3109P109SCcaTca11B.1.3280.03125
ORF1ab/nsp3109P109SCcaTca11B.1.3750.00082
ORF1ab/nsp3109P109SCcaTca11B.1.380.032258
ORF1ab/nsp3109P109SCcaTca11B.1.4260.001009
ORF1ab/nsp3109P109SCcaTca11B.1.5250.000113
ORF1ab/nsp3109P109SCcaTca11B.1.5650.00081
ORF1ab/nsp3109P109SCcaTca11C.350.000774
ORF1ab/nsp3109P109SCcaTca11P.1.120.000484
ORF1ab/nsp3109P109SCcaTca11P.20.000187
ORF1ab/nsp3109P109SCcaTca11P.70.004367
ORF1ab/nsp3109P109SCcaTca11Q.80.000165
ORF1ab/nsp3109P109SCcaTca11R.10.00009
ORF1ab/nsp3109P109SCcaTca11U.30.003861