CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 109 | P109L | P927L | nonsyn | cCa | cTa | 8035 | 8033 | 0.999751 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109L | P927L | nonsyn | CCa | TTa | 8035 | 2 | 0.000248911 | 3044-3046 |
Details of the mutation P109L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8033 | 8035 | All | 0.001536 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 2 | 8035 | All | 0 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1517 | 1517 | B.1.1.7 | 0.001358 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 899 | 899 | B.1.617.2 | 0.003385 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 789 | 789 | AY.25 | 0.004746 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 419 | 419 | AY.4 | 0.000652 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 298 | 298 | B.1.577 | 0.204811 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 284 | 284 | AY.103 | 0.001763 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 282 | 282 | AY.43 | 0.001249 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 264 | 264 | AY.44 | 0.001607 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 174 | 174 | AY.3 | 0.001731 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 165 | 165 | AY.9.2 | 0.00606 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 158 | 158 | AY.39 | 0.003904 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 134 | 134 | B.1.177 | 0.001764 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 124 | 124 | AY.109 | 0.091716 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 112 | 112 | P.1 | 0.001764 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 109 | 109 | AY.102 | 0.00289 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 107 | 107 | B.1.2 | 0.000942 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 101 | 101 | B.1.1 | 0.001832 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 97 | 97 | AY.88 | 0.085765 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 87 | 87 | AY.26 | 0.002463 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 78 | 78 | AY.5.1 | 0.293233 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 70 | 70 | AY.61 | 0.007334 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 66 | 66 | B.1.526 | 0.001551 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 49 | 49 | B.1.177.63 | 0.132432 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 47 | 47 | B.1.621 | 0.00416 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 46 | 46 | AY.20 | 0.001788 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 46 | 46 | B.1.284 | 0.605263 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 45 | 45 | AY.5 | 0.000929 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 44 | 44 | AY.4.2 | 0.000954 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 41 | 41 | R.1 | 0.00369 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 39 | 39 | AY.116.1 | 0.012146 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 38 | 38 | B.1.234 | 0.005014 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 32 | 32 | AY.47 | 0.000995 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 31 | 31 | B.1.438.1 | 0.003325 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 29 | 29 | AY.42 | 0.001167 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 29 | 29 | B.1.1.214 | 0.001608 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 28 | 28 | AY.75 | 0.001569 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 23 | 23 | B.1.36.22 | 0.027778 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 20 | 20 | AE.4 | 0.869565 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 20 | 20 | AY.46.6 | 0.001444 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 18 | 18 | B.1.1.318 | 0.005432 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.117 | 0.001268 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.98 | 0.001185 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | B.1.177.44 | 0.007784 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.177.69 | 0.020772 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 13 | 13 | AY.92 | 0.003735 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | AY.30 | 0.004353 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.1.348 | 0.008758 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.1.397 | 0.024775 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.517 | 0.004697 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | AY.37 | 0.003161 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.147 | 0.006803 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.91 | 0.018672 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | AY.12 | 0.002528 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 8 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 1 | 8 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.1.432 | 0.010127 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.44 | 0.8 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | Q.7 | 0.008889 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.120.2 | 0.008997 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.19 | 0.006842 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | B.1.177.35 | 0.004147 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AH.3 | 0.019011 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.1.89 | 0.030303 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | N.4 | 0.021277 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.1.205 | 0.01487 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.177.62 | 0.004768 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.36.21 | 0.008639 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.342 | 0.1875 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.51 | 0.005155 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.7 | 0.0131 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.385 | 0.008929 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.364 | 0.066667 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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