CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 618 | N618N | N1436N | syn | aaC | aaT | 5366 | 5366 | 1 | 4571-4573 |
Details of the mutation N618N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 5366 | 5366 | All | 0.001026 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3267 | 3267 | B.1.1.7 | 0.002925 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1408 | 1408 | A.23.1 | 0.991549 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 93 | 93 | A.23 | 0.978947 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 86 | 86 | Q.4 | 0.039109 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 75 | 75 | B.1.2 | 0.00066 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 34 | 34 | AY.45 | 0.004137 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 31 | 31 | B.1 | 0.000284 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 28 | 28 | B.1.177 | 0.000369 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 21 | 21 | B.1.1.39 | 0.010703 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 8 | 8 | A | 0.003096 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 8 | 8 | B.1.568 | 0.008889 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 6 | 6 | C.18 | 0.015544 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3 | 3 | B.1.441 | 0.028846 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 618 | N618N | aaC | aaT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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