CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 291 | N291N | N1109N | syn | aaT | aaC | 3608 | 3608 | 1 | 3590-3592 |
Details of the mutation N291N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3608 | 3608 | All | 0.00069 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1363 | 1363 | B.1.177.77 | 0.989833 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 594 | 594 | P.1.12 | 0.287512 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 494 | 494 | AY.4 | 0.000769 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 256 | 256 | B.1.1.7 | 0.000229 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 223 | 223 | AY.39 | 0.005511 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 138 | 138 | B.1.617.2 | 0.00052 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 118 | 118 | AY.103 | 0.000733 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 65 | 65 | AY.102 | 0.001723 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 35 | 35 | AY.120 | 0.001301 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 22 | 22 | AY.62 | 0.009586 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.83 | 0.003448 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 291 | N291N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|