CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = N291N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3291N291NN1109NsynaaTaaC3608360813590-3592

Details of the mutation N291N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3291N291NaaTaaC36083608All0.00069
ORF1ab/nsp3291N291NaaTaaC13631363B.1.177.770.989833
ORF1ab/nsp3291N291NaaTaaC594594P.1.120.287512
ORF1ab/nsp3291N291NaaTaaC494494AY.40.000769
ORF1ab/nsp3291N291NaaTaaC256256B.1.1.70.000229
ORF1ab/nsp3291N291NaaTaaC223223AY.390.005511
ORF1ab/nsp3291N291NaaTaaC138138B.1.617.20.00052
ORF1ab/nsp3291N291NaaTaaC118118AY.1030.000733
ORF1ab/nsp3291N291NaaTaaC6565AY.1020.001723
ORF1ab/nsp3291N291NaaTaaC3535AY.1200.001301
ORF1ab/nsp3291N291NaaTaaC2323B.1.1770.000303
ORF1ab/nsp3291N291NaaTaaC2323B.1.20.000203
ORF1ab/nsp3291N291NaaTaaC2222AY.620.009586
ORF1ab/nsp3291N291NaaTaaC2222B.10.000202
ORF1ab/nsp3291N291NaaTaaC2121B.1.3510.000624
ORF1ab/nsp3291N291NaaTaaC1919AY.430.000084
ORF1ab/nsp3291N291NaaTaaC1212AY.1190.000424
ORF1ab/nsp3291N291NaaTaaC1111P.10.000173
ORF1ab/nsp3291N291NaaTaaC1010AY.250.00006
ORF1ab/nsp3291N291NaaTaaC88B.1.438.10.000858
ORF1ab/nsp3291N291NaaTaaC77AY.200.000272
ORF1ab/nsp3291N291NaaTaaC77AY.30.00007
ORF1ab/nsp3291N291NaaTaaC77AY.610.000733
ORF1ab/nsp3291N291NaaTaaC55AY.440.00003
ORF1ab/nsp3291N291NaaTaaC55B.1.177.440.002595
ORF1ab/nsp3291N291NaaTaaC55B.1.177.80.003762
ORF1ab/nsp3291N291NaaTaaC44AY.460.000416
ORF1ab/nsp3291N291NaaTaaC44AY.750.000224
ORF1ab/nsp3291N291NaaTaaC44B.1.1.280.001245
ORF1ab/nsp3291N291NaaTaaC44B.1.6210.000354
ORF1ab/nsp3291N291NaaTaaC33A0.001161
ORF1ab/nsp3291N291NaaTaaC33A.23.10.002113
ORF1ab/nsp3291N291NaaTaaC33AY.1060.001005
ORF1ab/nsp3291N291NaaTaaC33AY.230.000209
ORF1ab/nsp3291N291NaaTaaC33AY.540.000286
ORF1ab/nsp3291N291NaaTaaC33AY.990.003148
ORF1ab/nsp3291N291NaaTaaC33B.1.1600.000094
ORF1ab/nsp3291N291NaaTaaC33B.1.2430.000209
ORF1ab/nsp3291N291NaaTaaC220.111111
ORF1ab/nsp3291N291NaaTaaC22AY.1100.000225
ORF1ab/nsp3291N291NaaTaaC22AY.120.000632
ORF1ab/nsp3291N291NaaTaaC22AY.270.000129
ORF1ab/nsp3291N291NaaTaaC22AY.360.000296
ORF1ab/nsp3291N291NaaTaaC22AY.4.20.000043
ORF1ab/nsp3291N291NaaTaaC22AY.4.2.10.000298
ORF1ab/nsp3291N291NaaTaaC22AY.60.000082
ORF1ab/nsp3291N291NaaTaaC22AY.830.003448
ORF1ab/nsp3291N291NaaTaaC22AY.9.10.000167
ORF1ab/nsp3291N291NaaTaaC22AY.980.000158
ORF1ab/nsp3291N291NaaTaaC22AY.99.20.000184
ORF1ab/nsp3291N291NaaTaaC22B.1.10.000036
ORF1ab/nsp3291N291NaaTaaC22B.1.1.1530.002191
ORF1ab/nsp3291N291NaaTaaC22B.1.1.3020.004149
ORF1ab/nsp3291N291NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp3291N291NaaTaaC22B.1.177.210.000153
ORF1ab/nsp3291N291NaaTaaC22B.1.5170.000854
ORF1ab/nsp3291N291NaaTaaC22P.1.10.000635
ORF1ab/nsp3291N291NaaTaaC11AY.1170.000085
ORF1ab/nsp3291N291NaaTaaC11AY.1210.000135
ORF1ab/nsp3291N291NaaTaaC11AY.240.000431
ORF1ab/nsp3291N291NaaTaaC11AY.290.000016
ORF1ab/nsp3291N291NaaTaaC11AY.34.10.00051
ORF1ab/nsp3291N291NaaTaaC11AY.39.10.00004
ORF1ab/nsp3291N291NaaTaaC11AY.39.20.001541
ORF1ab/nsp3291N291NaaTaaC11AY.420.00004
ORF1ab/nsp3291N291NaaTaaC11AY.450.000122
ORF1ab/nsp3291N291NaaTaaC11AY.470.000031
ORF1ab/nsp3291N291NaaTaaC11AY.50.000021
ORF1ab/nsp3291N291NaaTaaC11AY.520.000814
ORF1ab/nsp3291N291NaaTaaC11AY.650.000533
ORF1ab/nsp3291N291NaaTaaC11AY.690.000187
ORF1ab/nsp3291N291NaaTaaC11AY.880.000884
ORF1ab/nsp3291N291NaaTaaC11AY.90.000068
ORF1ab/nsp3291N291NaaTaaC11AY.9.20.000037
ORF1ab/nsp3291N291NaaTaaC11AY.920.000287
ORF1ab/nsp3291N291NaaTaaC11B.1.1.2690.001353
ORF1ab/nsp3291N291NaaTaaC11B.1.1.3890.006061
ORF1ab/nsp3291N291NaaTaaC11B.1.1190.010526
ORF1ab/nsp3291N291NaaTaaC11B.1.177.730.000566
ORF1ab/nsp3291N291NaaTaaC11B.1.2210.000071
ORF1ab/nsp3291N291NaaTaaC11B.1.2340.000132
ORF1ab/nsp3291N291NaaTaaC11B.1.2580.000067
ORF1ab/nsp3291N291NaaTaaC11B.1.258.170.000104
ORF1ab/nsp3291N291NaaTaaC11B.1.3400.004292
ORF1ab/nsp3291N291NaaTaaC11B.1.360.000146
ORF1ab/nsp3291N291NaaTaaC11B.1.3890.001002
ORF1ab/nsp3291N291NaaTaaC11B.1.3960.000706
ORF1ab/nsp3291N291NaaTaaC11B.1.4160.001269
ORF1ab/nsp3291N291NaaTaaC11B.1.4270.00005
ORF1ab/nsp3291N291NaaTaaC11B.1.621.10.000506
ORF1ab/nsp3291N291NaaTaaC11P.1.140.000048
ORF1ab/nsp3291N291NaaTaaC11Q.10.000126
ORF1ab/nsp3291N291NaaTaaC11Q.30.000145
ORF1ab/nsp3291N291NaaTaaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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