CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1890 | N1890N | N2708N | syn | aaC | aaT | 6612 | 6612 | 1 | 8387-8389 |
Details of the mutation N1890N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6612 | 6612 | All | 0.001265 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1373 | 1373 | B.1.110.3 | 0.986351 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1258 | 1258 | B.1.1.7 | 0.001126 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 428 | 428 | AY.4 | 0.000666 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 322 | 322 | B.1 | 0.002949 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 307 | 307 | B.1.425 | 0.919162 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 248 | 248 | AY.9.2 | 0.009109 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 216 | 216 | B.1.110 | 0.977376 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 195 | 195 | AY.43 | 0.000864 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 175 | 175 | B.1.617.2 | 0.000659 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 132 | 132 | P.1 | 0.00208 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 112 | 112 | AY.25 | 0.000674 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 111 | 111 | AY.3 | 0.001104 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 92 | 92 | AY.44 | 0.00056 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 88 | 88 | B.1.2 | 0.000775 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 83 | 83 | AY.103 | 0.000515 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 73 | 73 | AY.6 | 0.003002 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 67 | 67 | AY.23 | 0.004673 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 55 | 55 | D.2 | 0.004127 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 50 | 50 | B.1.1 | 0.000907 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 44 | 44 | B.1.221 | 0.003125 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 43 | 43 | B.1.177 | 0.000566 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 42 | 42 | AY.9.1 | 0.003516 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 35 | 35 | B.1.596 | 0.00305 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 29 | 29 | AY.39 | 0.000717 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 28 | 28 | AY.29 | 0.000442 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 27 | 27 | B.1.1.207 | 0.031915 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 26 | 26 | AY.47 | 0.000809 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 22 | 22 | A.2 | 0.01456 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 20 | 20 | AY.33 | 0.001336 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 20 | 20 | B.1.595 | 0.005219 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 17 | 17 | B.1.1.1 | 0.005554 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 16 | 16 | AY.121 | 0.002165 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 16 | 16 | B.1.206 | 0.013051 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 15 | 15 | AY.26 | 0.000425 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 15 | 15 | B.1.575 | 0.004551 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 14 | 14 | AY.85 | 0.00598 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 14 | 14 | B.1.525 | 0.001584 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 12 | 12 | AY.45 | 0.00146 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 12 | 12 | AY.7.2 | 0.006711 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 12 | 12 | B.1.1.50 | 0.008147 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | B.1.110.1 | 1 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | B.1.177.85 | 0.054348 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 10 | 10 | B.1.351.5 | 0.005995 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 9 | 9 | B.1.111 | 0.010576 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 8 | 8 | B.1.177.33 | 0.013158 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 7 | 7 | B.1.36.18 | 0.002941 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 7 | 7 | P.1.10 | 0.001886 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | AY.46.1 | 0.00616 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | B.1.110.2 | 1 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | B.1.160.26 | 0.014528 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 6 | 6 | P.1.17.1 | 0.005249 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | B.1.36.16 | 0.007123 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.177.51 | 0.018265 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.5.2 | 0.007389 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | B.1.1.218 | 0.023077 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | B.1.1.71 | 0.018182 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | A.24 | 0.071429 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1890 | N1890N | aaC | aaT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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