CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = N1785N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31785N1785NN2603NsynaaCaaT1389138918072-8074

Details of the mutation N1785N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31785N1785NaaCaaT13891389All0.000266
ORF1ab/nsp31785N1785NaaCaaT317317AY.4.20.006875
ORF1ab/nsp31785N1785NaaCaaT280280B.1.1.70.000251
ORF1ab/nsp31785N1785NaaCaaT227227B.1.177.770.164851
ORF1ab/nsp31785N1785NaaCaaT6969B.1.4290.001623
ORF1ab/nsp31785N1785NaaCaaT5555AY.40.000086
ORF1ab/nsp31785N1785NaaCaaT3131B.1.466.20.012128
ORF1ab/nsp31785N1785NaaCaaT3030B.1.10.000544
ORF1ab/nsp31785N1785NaaCaaT2424AY.130.003863
ORF1ab/nsp31785N1785NaaCaaT2424AY.430.000106
ORF1ab/nsp31785N1785NaaCaaT2020AY.440.000122
ORF1ab/nsp31785N1785NaaCaaT1919B.1.617.20.000072
ORF1ab/nsp31785N1785NaaCaaT1818B.10.000165
ORF1ab/nsp31785N1785NaaCaaT1818P.1.140.00086
ORF1ab/nsp31785N1785NaaCaaT1717B.1.1770.000224
ORF1ab/nsp31785N1785NaaCaaT1313B.1.20.000114
ORF1ab/nsp31785N1785NaaCaaT1111AY.750.000616
ORF1ab/nsp31785N1785NaaCaaT1010AY.1020.000265
ORF1ab/nsp31785N1785NaaCaaT1010AY.1030.000062
ORF1ab/nsp31785N1785NaaCaaT1010B.1.1.2010.243902
ORF1ab/nsp31785N1785NaaCaaT1010B.1.3960.007057
ORF1ab/nsp31785N1785NaaCaaT88AY.360.001186
ORF1ab/nsp31785N1785NaaCaaT77B.1.177.40.001477
ORF1ab/nsp31785N1785NaaCaaT77B.1.2580.000466
ORF1ab/nsp31785N1785NaaCaaT77P.10.00011
ORF1ab/nsp31785N1785NaaCaaT66B.1.258.170.000624
ORF1ab/nsp31785N1785NaaCaaT66R.10.00054
ORF1ab/nsp31785N1785NaaCaaT55AY.30.00005
ORF1ab/nsp31785N1785NaaCaaT55AY.470.000156
ORF1ab/nsp31785N1785NaaCaaT55B.1.1.1630.038168
ORF1ab/nsp31785N1785NaaCaaT55B.1.3620.007704
ORF1ab/nsp31785N1785NaaCaaT44B.1.1.1760.001757
ORF1ab/nsp31785N1785NaaCaaT33AY.1170.000254
ORF1ab/nsp31785N1785NaaCaaT33AY.200.000117
ORF1ab/nsp31785N1785NaaCaaT33AY.250.000018
ORF1ab/nsp31785N1785NaaCaaT33AY.390.000074
ORF1ab/nsp31785N1785NaaCaaT33AY.39.10.000119
ORF1ab/nsp31785N1785NaaCaaT33AY.50.000062
ORF1ab/nsp31785N1785NaaCaaT33B.1.1.5190.000119
ORF1ab/nsp31785N1785NaaCaaT33B.1.5950.000783
ORF1ab/nsp31785N1785NaaCaaT22A.2.50.000998
ORF1ab/nsp31785N1785NaaCaaT22AD.20.000438
ORF1ab/nsp31785N1785NaaCaaT22AY.1130.000285
ORF1ab/nsp31785N1785NaaCaaT22AY.1190.000071
ORF1ab/nsp31785N1785NaaCaaT22AY.230.000139
ORF1ab/nsp31785N1785NaaCaaT22AY.290.000032
ORF1ab/nsp31785N1785NaaCaaT22AY.460.000208
ORF1ab/nsp31785N1785NaaCaaT22AY.60.000082
ORF1ab/nsp31785N1785NaaCaaT22AZ.20.001642
ORF1ab/nsp31785N1785NaaCaaT22B.1.1.10.000653
ORF1ab/nsp31785N1785NaaCaaT22B.1.1.1370.025
ORF1ab/nsp31785N1785NaaCaaT22B.1.1.1410.004024
ORF1ab/nsp31785N1785NaaCaaT22B.1.1.2220.000408
ORF1ab/nsp31785N1785NaaCaaT22B.1.1.2770.001517
ORF1ab/nsp31785N1785NaaCaaT22B.1.1600.000062
ORF1ab/nsp31785N1785NaaCaaT22B.1.2210.000142
ORF1ab/nsp31785N1785NaaCaaT22B.1.3320.006993
ORF1ab/nsp31785N1785NaaCaaT22B.1.3510.000059
ORF1ab/nsp31785N1785NaaCaaT22B.1.5260.000047
ORF1ab/nsp31785N1785NaaCaaT22B.1.6210.000177
ORF1ab/nsp31785N1785NaaCaaT22N.40.008511
ORF1ab/nsp31785N1785NaaCaaT22P.20.000373
ORF1ab/nsp31785N1785NaaCaaT110.055556
ORF1ab/nsp31785N1785NaaCaaT11AG.10.066667
ORF1ab/nsp31785N1785NaaCaaT11AY.1010.00049
ORF1ab/nsp31785N1785NaaCaaT11AY.1160.000287
ORF1ab/nsp31785N1785NaaCaaT11AY.1180.000063
ORF1ab/nsp31785N1785NaaCaaT11AY.16.10.00047
ORF1ab/nsp31785N1785NaaCaaT11AY.270.000065
ORF1ab/nsp31785N1785NaaCaaT11AY.3.10.000085
ORF1ab/nsp31785N1785NaaCaaT11AY.4.30.000842
ORF1ab/nsp31785N1785NaaCaaT11AY.4.50.000107
ORF1ab/nsp31785N1785NaaCaaT11AY.450.000122
ORF1ab/nsp31785N1785NaaCaaT11AY.500.000799
ORF1ab/nsp31785N1785NaaCaaT11AY.530.000288
ORF1ab/nsp31785N1785NaaCaaT11AY.540.000095
ORF1ab/nsp31785N1785NaaCaaT11AY.610.000105
ORF1ab/nsp31785N1785NaaCaaT11AY.620.000436
ORF1ab/nsp31785N1785NaaCaaT11AY.670.000464
ORF1ab/nsp31785N1785NaaCaaT11AY.690.000187
ORF1ab/nsp31785N1785NaaCaaT11AY.7.10.000113
ORF1ab/nsp31785N1785NaaCaaT11AY.90.000068
ORF1ab/nsp31785N1785NaaCaaT11AY.9.10.000084
ORF1ab/nsp31785N1785NaaCaaT11AY.9.20.000037
ORF1ab/nsp31785N1785NaaCaaT11AY.99.20.000092
ORF1ab/nsp31785N1785NaaCaaT11AZ.10.000867
ORF1ab/nsp31785N1785NaaCaaT11AZ.50.003509
ORF1ab/nsp31785N1785NaaCaaT11B.1.1.1920.002309
ORF1ab/nsp31785N1785NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp31785N1785NaaCaaT11B.1.177.170.000821
ORF1ab/nsp31785N1785NaaCaaT11B.1.177.500.004695
ORF1ab/nsp31785N1785NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31785N1785NaaCaaT11B.1.177.860.000183
ORF1ab/nsp31785N1785NaaCaaT11B.1.360.000146
ORF1ab/nsp31785N1785NaaCaaT11B.1.36.360.000602
ORF1ab/nsp31785N1785NaaCaaT11B.1.4000.000429
ORF1ab/nsp31785N1785NaaCaaT11B.1.4360.001029
ORF1ab/nsp31785N1785NaaCaaT11B.1.4800.002488
ORF1ab/nsp31785N1785NaaCaaT11B.1.5750.000303
ORF1ab/nsp31785N1785NaaCaaT11B.1.617.30.002985
ORF1ab/nsp31785N1785NaaCaaT11B.1.6280.000352
ORF1ab/nsp31785N1785NaaCaaT11C.140.004329
ORF1ab/nsp31785N1785NaaCaaT11D.20.000075
ORF1ab/nsp31785N1785NaaCaaT11P.1.150.000232
ORF1ab/nsp31785N1785NaaCaaT11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.