CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1785 | N1785N | N2603N | syn | aaC | aaT | 1389 | 1389 | 1 | 8072-8074 |
Details of the mutation N1785N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1389 | 1389 | All | 0.000266 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 317 | 317 | AY.4.2 | 0.006875 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 280 | 280 | B.1.1.7 | 0.000251 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 227 | 227 | B.1.177.77 | 0.164851 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 69 | 69 | B.1.429 | 0.001623 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 55 | 55 | AY.4 | 0.000086 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 31 | 31 | B.1.466.2 | 0.012128 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 24 | 24 | AY.13 | 0.003863 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | B.1.1.201 | 0.243902 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | B.1.396 | 0.007057 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | B.1.1.163 | 0.038168 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | B.1.362 | 0.007704 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | P.7 | 0.004367 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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