CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = N1680S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31680N1680SN2498SnonsynaAtaGt16716717757-7759

Details of the mutation N1680S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31680N1680SaAtaGt167167All0.000032
ORF1ab/nsp31680N1680SaAtaGt6161B.1.1.70.000055
ORF1ab/nsp31680N1680SaAtaGt99AY.250.000054
ORF1ab/nsp31680N1680SaAtaGt88B.1.3610.010309
ORF1ab/nsp31680N1680SaAtaGt77AY.1030.000043
ORF1ab/nsp31680N1680SaAtaGt77AY.430.000031
ORF1ab/nsp31680N1680SaAtaGt66AY.40.000009
ORF1ab/nsp31680N1680SaAtaGt66B.1.177.820.002864
ORF1ab/nsp31680N1680SaAtaGt55B.1.1.5190.000199
ORF1ab/nsp31680N1680SaAtaGt55B.1.20.000044
ORF1ab/nsp31680N1680SaAtaGt44B.1.1080.023256
ORF1ab/nsp31680N1680SaAtaGt44B.1.617.20.000015
ORF1ab/nsp31680N1680SaAtaGt33AY.1200.000112
ORF1ab/nsp31680N1680SaAtaGt33AY.440.000018
ORF1ab/nsp31680N1680SaAtaGt33AY.7.10.000338
ORF1ab/nsp31680N1680SaAtaGt33B.10.000027
ORF1ab/nsp31680N1680SaAtaGt33B.1.1.2220.000612
ORF1ab/nsp31680N1680SaAtaGt33B.1.4560.009804
ORF1ab/nsp31680N1680SaAtaGt220.111111
ORF1ab/nsp31680N1680SaAtaGt22AY.470.000062
ORF1ab/nsp31680N1680SaAtaGt22AY.9.20.000073
ORF1ab/nsp31680N1680SaAtaGt22P.10.000032
ORF1ab/nsp31680N1680SaAtaGt11AY.1000.000046
ORF1ab/nsp31680N1680SaAtaGt11AY.1020.000027
ORF1ab/nsp31680N1680SaAtaGt11AY.260.000028
ORF1ab/nsp31680N1680SaAtaGt11AY.30.00001
ORF1ab/nsp31680N1680SaAtaGt11AY.340.000097
ORF1ab/nsp31680N1680SaAtaGt11AY.380.000499
ORF1ab/nsp31680N1680SaAtaGt11AY.39.10.00004
ORF1ab/nsp31680N1680SaAtaGt11AY.4.20.000022
ORF1ab/nsp31680N1680SaAtaGt11AY.46.60.000072
ORF1ab/nsp31680N1680SaAtaGt11AY.50.000021
ORF1ab/nsp31680N1680SaAtaGt11AY.740.000116
ORF1ab/nsp31680N1680SaAtaGt11AY.750.000056
ORF1ab/nsp31680N1680SaAtaGt11AY.98.10.000048
ORF1ab/nsp31680N1680SaAtaGt11B.1.1.3060.000438
ORF1ab/nsp31680N1680SaAtaGt11B.1.1.4190.007407
ORF1ab/nsp31680N1680SaAtaGt11B.1.3510.00003
ORF1ab/nsp31680N1680SaAtaGt11B.1.360.000146
ORF1ab/nsp31680N1680SaAtaGt11B.1.5610.000397
ORF1ab/nsp31680N1680SaAtaGt11C.270.018519

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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