CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = N1329N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31329N1329NN2147NsynaaCaaT212922129216704-6706

Details of the mutation N1329N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31329N1329NaaCaaT2129221292All0.004072
ORF1ab/nsp31329N1329NaaCaaT1331913319B.1.1.70.011923
ORF1ab/nsp31329N1329NaaCaaT16301630AY.40.002537
ORF1ab/nsp31329N1329NaaCaaT14921492B.1.2320.80172
ORF1ab/nsp31329N1329NaaCaaT883883AY.4.30.743266
ORF1ab/nsp31329N1329NaaCaaT454454B.1.1770.005978
ORF1ab/nsp31329N1329NaaCaaT323323C.36.3.10.877717
ORF1ab/nsp31329N1329NaaCaaT262262AY.370.082807
ORF1ab/nsp31329N1329NaaCaaT245245B.1.617.20.000923
ORF1ab/nsp31329N1329NaaCaaT138138C.230.802326
ORF1ab/nsp31329N1329NaaCaaT134134AY.1030.000832
ORF1ab/nsp31329N1329NaaCaaT132132AY.30.001313
ORF1ab/nsp31329N1329NaaCaaT132132B.10.001209
ORF1ab/nsp31329N1329NaaCaaT125125AY.250.000752
ORF1ab/nsp31329N1329NaaCaaT116116Q.80.019129
ORF1ab/nsp31329N1329NaaCaaT101101B.1.20.000889
ORF1ab/nsp31329N1329NaaCaaT9494AY.440.000572
ORF1ab/nsp31329N1329NaaCaaT7474AY.430.000328
ORF1ab/nsp31329N1329NaaCaaT6767B.1.4290.001576
ORF1ab/nsp31329N1329NaaCaaT6565B.1.10.001179
ORF1ab/nsp31329N1329NaaCaaT6060B.1.2430.004175
ORF1ab/nsp31329N1329NaaCaaT5959Q.10.007453
ORF1ab/nsp31329N1329NaaCaaT5858B.1.5750.017597
ORF1ab/nsp31329N1329NaaCaaT5353P.1.140.002533
ORF1ab/nsp31329N1329NaaCaaT5252B.1.36.290.026901
ORF1ab/nsp31329N1329NaaCaaT5151B.1.1.4340.017776
ORF1ab/nsp31329N1329NaaCaaT4949P.10.000772
ORF1ab/nsp31329N1329NaaCaaT4444B.1.5960.003834
ORF1ab/nsp31329N1329NaaCaaT4141AY.390.001013
ORF1ab/nsp31329N1329NaaCaaT3636R.10.00324
ORF1ab/nsp31329N1329NaaCaaT3131C.370.003598
ORF1ab/nsp31329N1329NaaCaaT3030B.1.1600.000936
ORF1ab/nsp31329N1329NaaCaaT2828B.1.2820.41791
ORF1ab/nsp31329N1329NaaCaaT2626AY.740.003007
ORF1ab/nsp31329N1329NaaCaaT2525AY.1020.000663
ORF1ab/nsp31329N1329NaaCaaT2525AY.850.010679
ORF1ab/nsp31329N1329NaaCaaT2525B.1.177.600.005461
ORF1ab/nsp31329N1329NaaCaaT2424AY.200.000933
ORF1ab/nsp31329N1329NaaCaaT2424B.1.177.440.012455
ORF1ab/nsp31329N1329NaaCaaT2020B.1.1.5190.000794
ORF1ab/nsp31329N1329NaaCaaT1919AY.50.000392
ORF1ab/nsp31329N1329NaaCaaT1818B.1.1.3170.00741
ORF1ab/nsp31329N1329NaaCaaT1717AY.420.000684
ORF1ab/nsp31329N1329NaaCaaT1717B.1.2580.001131
ORF1ab/nsp31329N1329NaaCaaT1616AY.1190.000565
ORF1ab/nsp31329N1329NaaCaaT1616B.1.5090.013853
ORF1ab/nsp31329N1329NaaCaaT1515B.1.3510.000446
ORF1ab/nsp31329N1329NaaCaaT1414AY.1180.000877
ORF1ab/nsp31329N1329NaaCaaT1313AY.640.007738
ORF1ab/nsp31329N1329NaaCaaT1212AY.330.000801
ORF1ab/nsp31329N1329NaaCaaT1212AY.98.10.000581
ORF1ab/nsp31329N1329NaaCaaT1212B.1.5820.005888
ORF1ab/nsp31329N1329NaaCaaT1111B.1.4270.000555
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5260.000259
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5610.004367
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5670.036667
ORF1ab/nsp31329N1329NaaCaaT1010AY.460.001041
ORF1ab/nsp31329N1329NaaCaaT1010AY.9.10.000837
ORF1ab/nsp31329N1329NaaCaaT1010B.1.1.630.003858
ORF1ab/nsp31329N1329NaaCaaT99AY.1200.000335
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.10.00294
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.2140.000499
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.500.00611
ORF1ab/nsp31329N1329NaaCaaT99B.1.177.350.00622
ORF1ab/nsp31329N1329NaaCaaT99B.1.6210.000797
ORF1ab/nsp31329N1329NaaCaaT88AY.1000.000368
ORF1ab/nsp31329N1329NaaCaaT88B.1.5250.000905
ORF1ab/nsp31329N1329NaaCaaT77AY.290.00011
ORF1ab/nsp31329N1329NaaCaaT77AY.450.000852
ORF1ab/nsp31329N1329NaaCaaT77AY.750.000392
ORF1ab/nsp31329N1329NaaCaaT77B.1.351.50.004197
ORF1ab/nsp31329N1329NaaCaaT77B.1.360.001021
ORF1ab/nsp31329N1329NaaCaaT77B.1.6370.000512
ORF1ab/nsp31329N1329NaaCaaT77P.1.60.013619
ORF1ab/nsp31329N1329NaaCaaT77P.20.001306
ORF1ab/nsp31329N1329NaaCaaT66AY.1130.000854
ORF1ab/nsp31329N1329NaaCaaT66AY.1170.000507
ORF1ab/nsp31329N1329NaaCaaT66AY.230.000418
ORF1ab/nsp31329N1329NaaCaaT66AY.270.000388
ORF1ab/nsp31329N1329NaaCaaT66AY.39.10.000238
ORF1ab/nsp31329N1329NaaCaaT66AY.4.40.002455
ORF1ab/nsp31329N1329NaaCaaT55AY.1050.003215
ORF1ab/nsp31329N1329NaaCaaT55AY.130.000805
ORF1ab/nsp31329N1329NaaCaaT55AY.16.10.00235
ORF1ab/nsp31329N1329NaaCaaT55AY.340.000485
ORF1ab/nsp31329N1329NaaCaaT55AY.5.40.001384
ORF1ab/nsp31329N1329NaaCaaT55AY.530.001438
ORF1ab/nsp31329N1329NaaCaaT55AY.610.000524
ORF1ab/nsp31329N1329NaaCaaT55B.1.1.3060.002192
ORF1ab/nsp31329N1329NaaCaaT55B.1.4000.002145
ORF1ab/nsp31329N1329NaaCaaT55B.1.4700.007022
ORF1ab/nsp31329N1329NaaCaaT55B.1.617.10.000645
ORF1ab/nsp31329N1329NaaCaaT44AY.3.10.000341
ORF1ab/nsp31329N1329NaaCaaT44AY.4.20.000087
ORF1ab/nsp31329N1329NaaCaaT44AY.5.30.00135
ORF1ab/nsp31329N1329NaaCaaT44AY.540.000381
ORF1ab/nsp31329N1329NaaCaaT44AY.9.20.000147
ORF1ab/nsp31329N1329NaaCaaT44AY.980.000316
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.2160.003562
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3180.001207
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3480.003185
ORF1ab/nsp31329N1329NaaCaaT44B.1.2340.000528
ORF1ab/nsp31329N1329NaaCaaT44B.1.4040.005208
ORF1ab/nsp31329N1329NaaCaaT44B.1.4650.015209
ORF1ab/nsp31329N1329NaaCaaT44B.1.5950.001044
ORF1ab/nsp31329N1329NaaCaaT33AY.100.00159
ORF1ab/nsp31329N1329NaaCaaT33AY.46.20.001906
ORF1ab/nsp31329N1329NaaCaaT33AY.560.004815
ORF1ab/nsp31329N1329NaaCaaT33AY.840.001312
ORF1ab/nsp31329N1329NaaCaaT33B0.000383
ORF1ab/nsp31329N1329NaaCaaT33B.1.1.700.001023
ORF1ab/nsp31329N1329NaaCaaT33B.1.110.30.002155
ORF1ab/nsp31329N1329NaaCaaT33B.1.1730.078947
ORF1ab/nsp31329N1329NaaCaaT33B.1.2400.000647
ORF1ab/nsp31329N1329NaaCaaT33B.60.00273
ORF1ab/nsp31329N1329NaaCaaT33C.36.30.001702
ORF1ab/nsp31329N1329NaaCaaT33C.90.090909
ORF1ab/nsp31329N1329NaaCaaT33P.1.160.001122
ORF1ab/nsp31329N1329NaaCaaT33P.1.170.000485
ORF1ab/nsp31329N1329NaaCaaT33P.1.20.003468
ORF1ab/nsp31329N1329NaaCaaT22A.10.000564
ORF1ab/nsp31329N1329NaaCaaT22A.290.010638
ORF1ab/nsp31329N1329NaaCaaT22AD.20.000438
ORF1ab/nsp31329N1329NaaCaaT22AY.1060.00067
ORF1ab/nsp31329N1329NaaCaaT22AY.1210.000271
ORF1ab/nsp31329N1329NaaCaaT22AY.260.000057
ORF1ab/nsp31329N1329NaaCaaT22AY.29.10.000441
ORF1ab/nsp31329N1329NaaCaaT22AY.4.2.10.000298
ORF1ab/nsp31329N1329NaaCaaT22AY.46.30.001867
ORF1ab/nsp31329N1329NaaCaaT22AY.46.50.000397
ORF1ab/nsp31329N1329NaaCaaT22AY.46.60.000144
ORF1ab/nsp31329N1329NaaCaaT22AY.700.000417
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1590.009346
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1980.002937
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2220.000408
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.250.001137
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2770.001517
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.280.000622
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.3020.004149
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.330.000842
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.370.000386
ORF1ab/nsp31329N1329NaaCaaT22B.1.160.90.014388
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.100.001756
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.120.000303
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.420.001789
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.560.001335
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.730.001133
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.770.001452
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.860.000367
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.170.000208
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.70.003824
ORF1ab/nsp31329N1329NaaCaaT22B.1.3150.012121
ORF1ab/nsp31329N1329NaaCaaT22B.1.36.100.009569
ORF1ab/nsp31329N1329NaaCaaT22B.1.5500.027397
ORF1ab/nsp31329N1329NaaCaaT22B.1.5760.001813
ORF1ab/nsp31329N1329NaaCaaT22B.1.5770.001375
ORF1ab/nsp31329N1329NaaCaaT22D.20.00015
ORF1ab/nsp31329N1329NaaCaaT22N.90.011905
ORF1ab/nsp31329N1329NaaCaaT22P.1.120.000968
ORF1ab/nsp31329N1329NaaCaaT22P.1.150.000465
ORF1ab/nsp31329N1329NaaCaaT22Q.70.002222
ORF1ab/nsp31329N1329NaaCaaT110.055556
ORF1ab/nsp31329N1329NaaCaaT11AY.10.000396
ORF1ab/nsp31329N1329NaaCaaT11AY.1070.000466
ORF1ab/nsp31329N1329NaaCaaT11AY.1080.001103
ORF1ab/nsp31329N1329NaaCaaT11AY.1160.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.116.10.000311
ORF1ab/nsp31329N1329NaaCaaT11AY.150.002222
ORF1ab/nsp31329N1329NaaCaaT11AY.160.00038
ORF1ab/nsp31329N1329NaaCaaT11AY.23.10.000417
ORF1ab/nsp31329N1329NaaCaaT11AY.280.00189
ORF1ab/nsp31329N1329NaaCaaT11AY.350.000233
ORF1ab/nsp31329N1329NaaCaaT11AY.4.50.000107
ORF1ab/nsp31329N1329NaaCaaT11AY.46.40.000165
ORF1ab/nsp31329N1329NaaCaaT11AY.470.000031
ORF1ab/nsp31329N1329NaaCaaT11AY.500.000799
ORF1ab/nsp31329N1329NaaCaaT11AY.580.000907
ORF1ab/nsp31329N1329NaaCaaT11AY.590.00053
ORF1ab/nsp31329N1329NaaCaaT11AY.60.000041
ORF1ab/nsp31329N1329NaaCaaT11AY.690.000187
ORF1ab/nsp31329N1329NaaCaaT11AY.7.20.000559
ORF1ab/nsp31329N1329NaaCaaT11AY.75.10.00018
ORF1ab/nsp31329N1329NaaCaaT11AY.810.001992
ORF1ab/nsp31329N1329NaaCaaT11AY.870.000833
ORF1ab/nsp31329N1329NaaCaaT11AY.890.004902
ORF1ab/nsp31329N1329NaaCaaT11AY.920.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.99.20.000092
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.150.013514
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2170.003636
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2200.001859
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2370.005405
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2790.001121
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2820.011628
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2840.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3030.002762
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3530.020833
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3560.008547
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.440.00241
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4400.011765
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4640.001473
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.470.005348
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.5210.005348
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.720.030303
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.890.006061
ORF1ab/nsp31329N1329NaaCaaT11B.1.1570.002985
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.160.000929
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.230.004831
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.170.000821
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.270.009434
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.330.001645
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.40.000211
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.80.000752
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.810.000189
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.820.000477
ORF1ab/nsp31329N1329NaaCaaT11B.1.2060.000816
ORF1ab/nsp31329N1329NaaCaaT11B.1.2140.003663
ORF1ab/nsp31329N1329NaaCaaT11B.1.2210.000071
ORF1ab/nsp31329N1329NaaCaaT11B.1.2410.000812
ORF1ab/nsp31329N1329NaaCaaT11B.1.2470.014925
ORF1ab/nsp31329N1329NaaCaaT11B.1.3110.000275
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.180.00042
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.350.002604
ORF1ab/nsp31329N1329NaaCaaT11B.1.3610.001289
ORF1ab/nsp31329N1329NaaCaaT11B.1.3690.000285
ORF1ab/nsp31329N1329NaaCaaT11B.1.3960.000706
ORF1ab/nsp31329N1329NaaCaaT11B.1.4260.001009
ORF1ab/nsp31329N1329NaaCaaT11B.1.438.10.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.466.20.000391
ORF1ab/nsp31329N1329NaaCaaT11B.1.4680.005714
ORF1ab/nsp31329N1329NaaCaaT11B.1.4970.000315
ORF1ab/nsp31329N1329NaaCaaT11B.1.499.10.111111
ORF1ab/nsp31329N1329NaaCaaT11B.1.5240.001406
ORF1ab/nsp31329N1329NaaCaaT11B.1.564.10.001577
ORF1ab/nsp31329N1329NaaCaaT11B.1.5900.004545
ORF1ab/nsp31329N1329NaaCaaT11B.1.5990.00365
ORF1ab/nsp31329N1329NaaCaaT11B.1.6000.005848
ORF1ab/nsp31329N1329NaaCaaT11B.1.6050.005952
ORF1ab/nsp31329N1329NaaCaaT11B.1.6090.000479
ORF1ab/nsp31329N1329NaaCaaT11B.1.619.10.000641
ORF1ab/nsp31329N1329NaaCaaT11B.1.6200.000946
ORF1ab/nsp31329N1329NaaCaaT11B.1.6230.000536
ORF1ab/nsp31329N1329NaaCaaT11B.1.80.001972
ORF1ab/nsp31329N1329NaaCaaT11B.370.028571
ORF1ab/nsp31329N1329NaaCaaT11B.400.000364
ORF1ab/nsp31329N1329NaaCaaT11C.290.0625
ORF1ab/nsp31329N1329NaaCaaT11C.300.001727
ORF1ab/nsp31329N1329NaaCaaT11C.390.018868
ORF1ab/nsp31329N1329NaaCaaT11N.60.007092
ORF1ab/nsp31329N1329NaaCaaT11P.1.10.000318
ORF1ab/nsp31329N1329NaaCaaT11P.1.90.004808

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.