CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 951 | M951V | M1769V | nonsyn | Atg | Gtg | 1499 | 1480 | 0.987325 | 5570-5572 |
ORF1ab/nsp3 | 951 | M951V | M1769V | nonsyn | AtG | GtT | 1499 | 19 | 0.0126751 | 5570-5572 |
Details of the mutation M951V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1480 | 1499 | All | 0.000283 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 19 | 1499 | All | 0.000004 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 404 | 404 | AY.4 | 0.000629 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 156 | 156 | B.1.1.7 | 0.00014 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 125 | 125 | AY.25 | 0.000752 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 80 | 80 | B.1.617.2 | 0.000301 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 59 | 59 | AY.44 | 0.000359 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 43 | 43 | B.1.2 | 0.000379 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 39 | 39 | B.1.234 | 0.005146 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 30 | 31 | B.1.177 | 0.000395 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 1 | 31 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 29 | 29 | AY.103 | 0.00018 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 26 | 26 | AY.46.5 | 0.005159 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 26 | 26 | B.1 | 0.000238 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 16 | 17 | P.1 | 0.000252 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 1 | 17 | P.1 | 0.000016 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 15 | 15 | B.1.416 | 0.019036 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 13 | 13 | B.1.404 | 0.016927 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 12 | 12 | AY.6 | 0.000494 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 10 | 10 | AY.9.1 | 0.000837 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 6 | 6 | A.2 | 0.003971 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 6 | 6 | B.1.625 | 0.014118 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 5 | 5 | B.1.177.47 | 0.064935 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 5 | 5 | B.1.36.10 | 0.023923 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 2 | 3 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 3 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 951 | M951V | AtG | GtT | 2 | 3 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 3 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | B.1.319 | 0.009146 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.160.8 | 0.002577 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | B.34 | 0.027397 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 951 | M951V | Atg | Gtg | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|