CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = M829I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3829M829IM1647InonsynatGatT262317090.6515445204-5206
ORF1ab/nsp3829M829IM1647InonsynatGatA26237560.288225204-5206
ORF1ab/nsp3829M829IM1647InonsynatGatC26231580.06023645204-5206

Details of the mutation M829I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3829M829IatGatT17092623All0.000327
ORF1ab/nsp3829M829IatGatA7562623All0.000145
ORF1ab/nsp3829M829IatGatC1582623All0.00003
ORF1ab/nsp3829M829IatGatA595733B.1.1.70.000533
ORF1ab/nsp3829M829IatGatT83733B.1.1.70.000074
ORF1ab/nsp3829M829IatGatC55733B.1.1.70.000049
ORF1ab/nsp3829M829IatGatT202249AY.40.000314
ORF1ab/nsp3829M829IatGatA43249AY.40.000067
ORF1ab/nsp3829M829IatGatC4249AY.40.000006
ORF1ab/nsp3829M829IatGatT245246AY.50.005059
ORF1ab/nsp3829M829IatGatC1246AY.50.000021
ORF1ab/nsp3829M829IatGatT92107B.1.617.20.000346
ORF1ab/nsp3829M829IatGatA9107B.1.617.20.000034
ORF1ab/nsp3829M829IatGatC6107B.1.617.20.000023
ORF1ab/nsp3829M829IatGatT7083B.10.000641
ORF1ab/nsp3829M829IatGatC1383B.10.000119
ORF1ab/nsp3829M829IatGatT7272B.1.2430.00501
ORF1ab/nsp3829M829IatGatT7171B.1.1.100.079153
ORF1ab/nsp3829M829IatGatT6666B.1.5521
ORF1ab/nsp3829M829IatGatT3257B.1.20.000282
ORF1ab/nsp3829M829IatGatA2557B.1.20.00022
ORF1ab/nsp3829M829IatGatT4553B.1.10.000816
ORF1ab/nsp3829M829IatGatC653B.1.10.000109
ORF1ab/nsp3829M829IatGatA253B.1.10.000036
ORF1ab/nsp3829M829IatGatT5353B.1.1.2310.164087
ORF1ab/nsp3829M829IatGatT4752AY.430.000208
ORF1ab/nsp3829M829IatGatC452AY.430.000018
ORF1ab/nsp3829M829IatGatA152AY.430.000004
ORF1ab/nsp3829M829IatGatA2636AY.1020.000689
ORF1ab/nsp3829M829IatGatT936AY.1020.000239
ORF1ab/nsp3829M829IatGatC136AY.1020.000027
ORF1ab/nsp3829M829IatGatT2936AY.440.000177
ORF1ab/nsp3829M829IatGatC636AY.440.000037
ORF1ab/nsp3829M829IatGatA136AY.440.000006
ORF1ab/nsp3829M829IatGatT3335AY.390.000815
ORF1ab/nsp3829M829IatGatA235AY.390.000049
ORF1ab/nsp3829M829IatGatT2929B.1.1.2140.001608
ORF1ab/nsp3829M829IatGatT2626B.1.5270.096296
ORF1ab/nsp3829M829IatGatT2525B.1.4671
ORF1ab/nsp3829M829IatGatT2323B.1.1.500.015614
ORF1ab/nsp3829M829IatGatT1423P.10.000221
ORF1ab/nsp3829M829IatGatC623P.10.000095
ORF1ab/nsp3829M829IatGatA323P.10.000047
ORF1ab/nsp3829M829IatGatT1321AY.250.000078
ORF1ab/nsp3829M829IatGatA821AY.250.000048
ORF1ab/nsp3829M829IatGatT1520AY.30.000149
ORF1ab/nsp3829M829IatGatA420AY.30.00004
ORF1ab/nsp3829M829IatGatC120AY.30.00001
ORF1ab/nsp3829M829IatGatT720B.1.4270.000353
ORF1ab/nsp3829M829IatGatC720B.1.4270.000353
ORF1ab/nsp3829M829IatGatA620B.1.4270.000303
ORF1ab/nsp3829M829IatGatC2020Q.10.002527
ORF1ab/nsp3829M829IatGatT1919AY.4.10.014012
ORF1ab/nsp3829M829IatGatT1919B.1.1.3170.007822
ORF1ab/nsp3829M829IatGatT1519B.1.1600.000468
ORF1ab/nsp3829M829IatGatC219B.1.1600.000062
ORF1ab/nsp3829M829IatGatA219B.1.1600.000062
ORF1ab/nsp3829M829IatGatT1717B.1.1.4340.005925
ORF1ab/nsp3829M829IatGatT1717B.1.1.5190.000675
ORF1ab/nsp3829M829IatGatT1515AY.260.000425
ORF1ab/nsp3829M829IatGatT1515B.1.617.10.001934
ORF1ab/nsp3829M829IatGatT1414B.1.360.002043
ORF1ab/nsp3829M829IatGatT1313B.1.160.300.03869
ORF1ab/nsp3829M829IatGatT1112B.1.4290.000259
ORF1ab/nsp3829M829IatGatC112B.1.4290.000024
ORF1ab/nsp3829M829IatGatT1011AY.1030.000062
ORF1ab/nsp3829M829IatGatA111AY.1030.000006
ORF1ab/nsp3829M829IatGatT711B.1.1770.000092
ORF1ab/nsp3829M829IatGatC211B.1.1770.000026
ORF1ab/nsp3829M829IatGatA211B.1.1770.000026
ORF1ab/nsp3829M829IatGatT910AY.4.20.000195
ORF1ab/nsp3829M829IatGatA110AY.4.20.000022
ORF1ab/nsp3829M829IatGatT68AY.9.10.000502
ORF1ab/nsp3829M829IatGatA18AY.9.10.000084
ORF1ab/nsp3829M829IatGatC18AY.9.10.000084
ORF1ab/nsp3829M829IatGatT77B.1.1.2220.001428
ORF1ab/nsp3829M829IatGatT56AY.420.000201
ORF1ab/nsp3829M829IatGatA16AY.420.00004
ORF1ab/nsp3829M829IatGatT46AY.840.00175
ORF1ab/nsp3829M829IatGatA26AY.840.000875
ORF1ab/nsp3829M829IatGatT66B.1.1.3560.051282
ORF1ab/nsp3829M829IatGatT66B.1.2580.000399
ORF1ab/nsp3829M829IatGatT66P.20.00112
ORF1ab/nsp3829M829IatGatT55AY.1180.000313
ORF1ab/nsp3829M829IatGatT55AY.200.000194
ORF1ab/nsp3829M829IatGatT55B.1.5260.000118
ORF1ab/nsp3829M829IatGatA34AY.1000.000138
ORF1ab/nsp3829M829IatGatT14AY.1000.000046
ORF1ab/nsp3829M829IatGatA24AY.1200.000074
ORF1ab/nsp3829M829IatGatT24AY.1200.000074
ORF1ab/nsp3829M829IatGatC34AY.270.000194
ORF1ab/nsp3829M829IatGatT14AY.270.000065
ORF1ab/nsp3829M829IatGatT44AY.450.000487
ORF1ab/nsp3829M829IatGatT34AY.470.000093
ORF1ab/nsp3829M829IatGatC14AY.470.000031
ORF1ab/nsp3829M829IatGatT44AY.99.10.006211
ORF1ab/nsp3829M829IatGatT44B.1.1.280.001245
ORF1ab/nsp3829M829IatGatT44B.1.1.4330.005698
ORF1ab/nsp3829M829IatGatT44B.1.3620.006163
ORF1ab/nsp3829M829IatGatT33AY.1060.001005
ORF1ab/nsp3829M829IatGatT33AY.5.40.00083
ORF1ab/nsp3829M829IatGatT33B.1.3460.003932
ORF1ab/nsp3829M829IatGatT33B.1.36.290.001552
ORF1ab/nsp3829M829IatGatT33B.1.5960.000261
ORF1ab/nsp3829M829IatGatT23B.1.6210.000177
ORF1ab/nsp3829M829IatGatC13B.1.6210.000089
ORF1ab/nsp3829M829IatGatT33B.1.6370.000219
ORF1ab/nsp3829M829IatGatC23D.20.00015
ORF1ab/nsp3829M829IatGatT13D.20.000075
ORF1ab/nsp3829M829IatGatA220.111111
ORF1ab/nsp3829M829IatGatT22A.20.001324
ORF1ab/nsp3829M829IatGatC12AY.230.00007
ORF1ab/nsp3829M829IatGatT12AY.230.00007
ORF1ab/nsp3829M829IatGatT22AY.290.000032
ORF1ab/nsp3829M829IatGatT22AY.460.000208
ORF1ab/nsp3829M829IatGatT22AY.46.60.000144
ORF1ab/nsp3829M829IatGatT22AY.610.00021
ORF1ab/nsp3829M829IatGatT22AY.720.002721
ORF1ab/nsp3829M829IatGatT22AY.850.000854
ORF1ab/nsp3829M829IatGatA12AY.98.10.000048
ORF1ab/nsp3829M829IatGatT12AY.98.10.000048
ORF1ab/nsp3829M829IatGatT22AY.990.002099
ORF1ab/nsp3829M829IatGatT22B.1.1.10.000653
ORF1ab/nsp3829M829IatGatC22B.1.1.1700.002494
ORF1ab/nsp3829M829IatGatT22B.1.1.1940.009901
ORF1ab/nsp3829M829IatGatT22B.1.1.2690.002706
ORF1ab/nsp3829M829IatGatT22B.1.1.3050.007722
ORF1ab/nsp3829M829IatGatC22B.1.1.3060.000877
ORF1ab/nsp3829M829IatGatT22B.1.1.3690.000892
ORF1ab/nsp3829M829IatGatT22B.1.177.560.001335
ORF1ab/nsp3829M829IatGatT22B.1.177.810.000379
ORF1ab/nsp3829M829IatGatT22B.1.2210.000142
ORF1ab/nsp3829M829IatGatA22B.1.2320.001075
ORF1ab/nsp3829M829IatGatT22B.1.258.140.001961
ORF1ab/nsp3829M829IatGatA22B.1.3510.000059
ORF1ab/nsp3829M829IatGatT22B.1.3670.001585
ORF1ab/nsp3829M829IatGatT22B.1.4000.000858
ORF1ab/nsp3829M829IatGatT22B.1.4700.002809
ORF1ab/nsp3829M829IatGatT22B.1.5760.001813
ORF1ab/nsp3829M829IatGatT22B.1.5770.001375
ORF1ab/nsp3829M829IatGatT22B.1.5950.000522
ORF1ab/nsp3829M829IatGatC12B.1.6230.000536
ORF1ab/nsp3829M829IatGatT12B.1.6230.000536
ORF1ab/nsp3829M829IatGatT22B.1.6280.000705
ORF1ab/nsp3829M829IatGatT22P.1.140.000096
ORF1ab/nsp3829M829IatGatT22P.1.70.000639
ORF1ab/nsp3829M829IatGatC11A.10.000282
ORF1ab/nsp3829M829IatGatT11A.2.20.001689
ORF1ab/nsp3829M829IatGatT11AD.20.000219
ORF1ab/nsp3829M829IatGatT11AE.10.011364
ORF1ab/nsp3829M829IatGatC11AY.100.00053
ORF1ab/nsp3829M829IatGatT11AY.1090.00074
ORF1ab/nsp3829M829IatGatA11AY.1160.000287
ORF1ab/nsp3829M829IatGatT11AY.1190.000035
ORF1ab/nsp3829M829IatGatT11AY.120.10.000321
ORF1ab/nsp3829M829IatGatT11AY.120.20.001285
ORF1ab/nsp3829M829IatGatT11AY.140.000088
ORF1ab/nsp3829M829IatGatT11AY.160.00038
ORF1ab/nsp3829M829IatGatT11AY.16.10.00047
ORF1ab/nsp3829M829IatGatT11AY.20.000356
ORF1ab/nsp3829M829IatGatC11AY.310.018519
ORF1ab/nsp3829M829IatGatA11AY.330.000067
ORF1ab/nsp3829M829IatGatT11AY.340.000097
ORF1ab/nsp3829M829IatGatT11AY.360.000148
ORF1ab/nsp3829M829IatGatC11AY.380.000499
ORF1ab/nsp3829M829IatGatT11AY.39.10.00004
ORF1ab/nsp3829M829IatGatA11AY.46.40.000165
ORF1ab/nsp3829M829IatGatT11AY.46.50.000198
ORF1ab/nsp3829M829IatGatC11AY.480.000465
ORF1ab/nsp3829M829IatGatA11AY.5.10.003759
ORF1ab/nsp3829M829IatGatT11AY.5.30.000337
ORF1ab/nsp3829M829IatGatT11AY.520.000814
ORF1ab/nsp3829M829IatGatT11AY.540.000095
ORF1ab/nsp3829M829IatGatT11AY.7.10.000113
ORF1ab/nsp3829M829IatGatA11AY.7.20.000559
ORF1ab/nsp3829M829IatGatT11AY.710.000475
ORF1ab/nsp3829M829IatGatT11AY.750.000056
ORF1ab/nsp3829M829IatGatT11AY.9.20.000037
ORF1ab/nsp3829M829IatGatT11AY.9.2.10.001976
ORF1ab/nsp3829M829IatGatT11AY.980.000079
ORF1ab/nsp3829M829IatGatT11AY.99.20.000092
ORF1ab/nsp3829M829IatGatA11B0.000128
ORF1ab/nsp3829M829IatGatA11B.1.1.1320.014925
ORF1ab/nsp3829M829IatGatT11B.1.1.1410.002012
ORF1ab/nsp3829M829IatGatT11B.1.1.1450.037037
ORF1ab/nsp3829M829IatGatT11B.1.1.1810.004545
ORF1ab/nsp3829M829IatGatT11B.1.1.2160.00089
ORF1ab/nsp3829M829IatGatT11B.1.1.2180.007692
ORF1ab/nsp3829M829IatGatT11B.1.1.250.000569
ORF1ab/nsp3829M829IatGatT11B.1.1.2610.008621
ORF1ab/nsp3829M829IatGatT11B.1.1.3180.000302
ORF1ab/nsp3829M829IatGatA11B.1.1.3220.008772
ORF1ab/nsp3829M829IatGatT11B.1.1.330.000421
ORF1ab/nsp3829M829IatGatT11B.1.1.3530.020833
ORF1ab/nsp3829M829IatGatA11B.1.1.3730.02381
ORF1ab/nsp3829M829IatGatT11B.1.1.3890.006061
ORF1ab/nsp3829M829IatGatT11B.1.1.4850.016667
ORF1ab/nsp3829M829IatGatT11B.1.1.700.000341
ORF1ab/nsp3829M829IatGatT11B.1.1180.006711
ORF1ab/nsp3829M829IatGatT11B.1.1460.004237
ORF1ab/nsp3829M829IatGatC11B.1.160.140.002119
ORF1ab/nsp3829M829IatGatT11B.1.177.120.000152
ORF1ab/nsp3829M829IatGatT11B.1.177.210.000076
ORF1ab/nsp3829M829IatGatT11B.1.177.390.015385
ORF1ab/nsp3829M829IatGatC11B.1.177.430.001477
ORF1ab/nsp3829M829IatGatT11B.1.177.450.000381
ORF1ab/nsp3829M829IatGatT11B.1.177.520.001757
ORF1ab/nsp3829M829IatGatT11B.1.177.530.002392
ORF1ab/nsp3829M829IatGatT11B.1.177.600.000218
ORF1ab/nsp3829M829IatGatT11B.1.177.730.000566
ORF1ab/nsp3829M829IatGatT11B.1.1990.004132
ORF1ab/nsp3829M829IatGatT11B.1.36.100.004785
ORF1ab/nsp3829M829IatGatT11B.1.36.120.009615
ORF1ab/nsp3829M829IatGatT11B.1.36.370.002778
ORF1ab/nsp3829M829IatGatT11B.1.3810.007812
ORF1ab/nsp3829M829IatGatT11B.1.3960.000706
ORF1ab/nsp3829M829IatGatT11B.1.438.10.000107
ORF1ab/nsp3829M829IatGatT11B.1.4530.003236
ORF1ab/nsp3829M829IatGatT11B.1.4710.002732
ORF1ab/nsp3829M829IatGatT11B.1.5170.000427
ORF1ab/nsp3829M829IatGatT11B.1.5250.000113
ORF1ab/nsp3829M829IatGatT11B.1.5510.00129
ORF1ab/nsp3829M829IatGatT11B.1.5640.000426
ORF1ab/nsp3829M829IatGatT11B.1.5670.003333
ORF1ab/nsp3829M829IatGatT11B.1.5870.001898
ORF1ab/nsp3829M829IatGatT11B.1.6270.00202
ORF1ab/nsp3829M829IatGatT11B.1.6330.041667
ORF1ab/nsp3829M829IatGatT11B.1.930.000934
ORF1ab/nsp3829M829IatGatC11B.100.008264
ORF1ab/nsp3829M829IatGatT11C.350.000774
ORF1ab/nsp3829M829IatGatT11C.360.000911
ORF1ab/nsp3829M829IatGatT11N.40.004255
ORF1ab/nsp3829M829IatGatC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.