CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = M1788del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31788M1788del2M2606del2delaTGa--1160.5454558081-8083
ORF1ab/nsp31788M1788del2M2606del2delATg--g1150.4545458081-8083

Details of the mutation M1788del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31788M1788del2aTGa--611All0.000001
ORF1ab/nsp31788M1788del2ATg--g511All0.000001
ORF1ab/nsp31788M1788del2ATg--g22AY.250.000012
ORF1ab/nsp31788M1788del2ATg--g22B.1.1.70.000002
ORF1ab/nsp31788M1788del2ATg--g11AY.430.000004
ORF1ab/nsp31788M1788del2aTGa--11B.10.000009
ORF1ab/nsp31788M1788del2aTGa--11B.1.10.000018
ORF1ab/nsp31788M1788del2aTGa--11B.1.1.2260.005814
ORF1ab/nsp31788M1788del2aTGa--11B.1.617.20.000004
ORF1ab/nsp31788M1788del2aTGa--11D.20.000075
ORF1ab/nsp31788M1788del2aTGa--11P.1.140.000048