CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = M1788I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31788M1788IM2606InonsynatGatA53242526930.9896898081-8083
ORF1ab/nsp31788M1788IM2606InonsynatGatT532425250.009860648081-8083
ORF1ab/nsp31788M1788IM2606InonsynatGatC53242240.0004507728081-8083

Details of the mutation M1788I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31788M1788IatGatA5269353242All0.010078
ORF1ab/nsp31788M1788IatGatT52553242All0.0001
ORF1ab/nsp31788M1788IatGatC2453242All0.000005
ORF1ab/nsp31788M1788IatGatA5117651177B.1.20.450624
ORF1ab/nsp31788M1788IatGatT151177B.1.20.000009
ORF1ab/nsp31788M1788IatGatA645645B.1.5960.056204
ORF1ab/nsp31788M1788IatGatA434446B.10.003975
ORF1ab/nsp31788M1788IatGatT12446B.10.00011
ORF1ab/nsp31788M1788IatGatT117184B.1.1.70.000105
ORF1ab/nsp31788M1788IatGatA67184B.1.1.70.00006
ORF1ab/nsp31788M1788IatGatT5262AY.40.000081
ORF1ab/nsp31788M1788IatGatA962AY.40.000014
ORF1ab/nsp31788M1788IatGatC162AY.40.000002
ORF1ab/nsp31788M1788IatGatT3752AY.250.000223
ORF1ab/nsp31788M1788IatGatA1552AY.250.00009
ORF1ab/nsp31788M1788IatGatT3552B.1.617.20.000132
ORF1ab/nsp31788M1788IatGatA1752B.1.617.20.000064
ORF1ab/nsp31788M1788IatGatA3745B.1.10.000671
ORF1ab/nsp31788M1788IatGatT845B.1.10.000145
ORF1ab/nsp31788M1788IatGatT2830AY.430.000124
ORF1ab/nsp31788M1788IatGatA230AY.430.000009
ORF1ab/nsp31788M1788IatGatT2430P.10.000378
ORF1ab/nsp31788M1788IatGatA630P.10.000095
ORF1ab/nsp31788M1788IatGatA1528B.1.4290.000353
ORF1ab/nsp31788M1788IatGatT1228B.1.4290.000282
ORF1ab/nsp31788M1788IatGatC128B.1.4290.000024
ORF1ab/nsp31788M1788IatGatA2727B.1.1.5190.001072
ORF1ab/nsp31788M1788IatGatA1021AY.1030.000062
ORF1ab/nsp31788M1788IatGatT1021AY.1030.000062
ORF1ab/nsp31788M1788IatGatC121AY.1030.000006
ORF1ab/nsp31788M1788IatGatT1818B.1.1.390.009174
ORF1ab/nsp31788M1788IatGatT1216AY.30.000119
ORF1ab/nsp31788M1788IatGatA416AY.30.00004
ORF1ab/nsp31788M1788IatGatC1616B.1.2580.001065
ORF1ab/nsp31788M1788IatGatA1616B.1.5950.004175
ORF1ab/nsp31788M1788IatGatA1515B.1.177.730.008494
ORF1ab/nsp31788M1788IatGatA1515B.1.4080.055351
ORF1ab/nsp31788M1788IatGatT1212B.1.1.2140.000665
ORF1ab/nsp31788M1788IatGatA1212B.1.2340.001583
ORF1ab/nsp31788M1788IatGatA1212C.160.012725
ORF1ab/nsp31788M1788IatGatT710AY.260.000198
ORF1ab/nsp31788M1788IatGatA310AY.260.000085
ORF1ab/nsp31788M1788IatGatT89AY.290.000126
ORF1ab/nsp31788M1788IatGatA19AY.290.000016
ORF1ab/nsp31788M1788IatGatA69B.1.5260.000141
ORF1ab/nsp31788M1788IatGatT39B.1.5260.000071
ORF1ab/nsp31788M1788IatGatT88AY.4.20.000174
ORF1ab/nsp31788M1788IatGatT68B.1.1770.000079
ORF1ab/nsp31788M1788IatGatA28B.1.1770.000026
ORF1ab/nsp31788M1788IatGatA88B.1.2430.000557
ORF1ab/nsp31788M1788IatGatT77B.1.5030.017413
ORF1ab/nsp31788M1788IatGatA77B.1.5800.028455
ORF1ab/nsp31788M1788IatGatA46AY.440.000024
ORF1ab/nsp31788M1788IatGatT26AY.440.000012
ORF1ab/nsp31788M1788IatGatA46B0.000511
ORF1ab/nsp31788M1788IatGatT26B0.000256
ORF1ab/nsp31788M1788IatGatA66B.1.5670.02
ORF1ab/nsp31788M1788IatGatT45AY.1020.000106
ORF1ab/nsp31788M1788IatGatA15AY.1020.000027
ORF1ab/nsp31788M1788IatGatT55B.1.1.280.001556
ORF1ab/nsp31788M1788IatGatA55B.1.1.3350.064935
ORF1ab/nsp31788M1788IatGatA45B.1.2400.000862
ORF1ab/nsp31788M1788IatGatT15B.1.2400.000216
ORF1ab/nsp31788M1788IatGatA55B.1.3960.003529
ORF1ab/nsp31788M1788IatGatT55P.1.160.001871
ORF1ab/nsp31788M1788IatGatT44AY.1190.000141
ORF1ab/nsp31788M1788IatGatT44AY.500.003197
ORF1ab/nsp31788M1788IatGatT34AY.90.000203
ORF1ab/nsp31788M1788IatGatA14AY.90.000068
ORF1ab/nsp31788M1788IatGatT44AY.990.004197
ORF1ab/nsp31788M1788IatGatT44B.1.1.3170.001647
ORF1ab/nsp31788M1788IatGatA23AY.230.000139
ORF1ab/nsp31788M1788IatGatT13AY.230.00007
ORF1ab/nsp31788M1788IatGatT33AY.360.000445
ORF1ab/nsp31788M1788IatGatT23AY.390.000049
ORF1ab/nsp31788M1788IatGatA13AY.390.000025
ORF1ab/nsp31788M1788IatGatA23AY.750.000112
ORF1ab/nsp31788M1788IatGatT13AY.750.000056
ORF1ab/nsp31788M1788IatGatT33AY.9.20.00011
ORF1ab/nsp31788M1788IatGatT33B.1.1.3260.005282
ORF1ab/nsp31788M1788IatGatT33B.1.1.3970.006757
ORF1ab/nsp31788M1788IatGatA33B.1.1390.002199
ORF1ab/nsp31788M1788IatGatA33B.1.3670.002377
ORF1ab/nsp31788M1788IatGatT13B.1.3750.00082
ORF1ab/nsp31788M1788IatGatA13B.1.3750.00082
ORF1ab/nsp31788M1788IatGatC13B.1.3750.00082
ORF1ab/nsp31788M1788IatGatT33B.1.4040.003906
ORF1ab/nsp31788M1788IatGatA33B.1.5640.001278
ORF1ab/nsp31788M1788IatGatA33B.1.5770.002062
ORF1ab/nsp31788M1788IatGatT23B.1.6230.001073
ORF1ab/nsp31788M1788IatGatA13B.1.6230.000536
ORF1ab/nsp31788M1788IatGatT120.055556
ORF1ab/nsp31788M1788IatGatA120.055556
ORF1ab/nsp31788M1788IatGatT22A.10.000564
ORF1ab/nsp31788M1788IatGatA22AY.1170.000169
ORF1ab/nsp31788M1788IatGatA12AY.1200.000037
ORF1ab/nsp31788M1788IatGatT12AY.1200.000037
ORF1ab/nsp31788M1788IatGatT22AY.39.10.000079
ORF1ab/nsp31788M1788IatGatT22AY.420.00008
ORF1ab/nsp31788M1788IatGatT12AY.470.000031
ORF1ab/nsp31788M1788IatGatA12AY.470.000031
ORF1ab/nsp31788M1788IatGatT12AY.75.10.00018
ORF1ab/nsp31788M1788IatGatA12AY.75.10.00018
ORF1ab/nsp31788M1788IatGatT22AY.980.000158
ORF1ab/nsp31788M1788IatGatA22AY.99.20.000184
ORF1ab/nsp31788M1788IatGatT12AZ.20.000821
ORF1ab/nsp31788M1788IatGatA12AZ.20.000821
ORF1ab/nsp31788M1788IatGatT22B.1.1.10.000653
ORF1ab/nsp31788M1788IatGatA22B.1.1.1920.004619
ORF1ab/nsp31788M1788IatGatA22B.1.1.2160.001781
ORF1ab/nsp31788M1788IatGatT12B.1.1.2840.000107
ORF1ab/nsp31788M1788IatGatC12B.1.1.2840.000107
ORF1ab/nsp31788M1788IatGatA22B.1.177.860.000367
ORF1ab/nsp31788M1788IatGatA22B.1.2060.001631
ORF1ab/nsp31788M1788IatGatA22B.1.2140.007326
ORF1ab/nsp31788M1788IatGatT12B.1.2320.000537
ORF1ab/nsp31788M1788IatGatA12B.1.2320.000537
ORF1ab/nsp31788M1788IatGatA22B.1.2650.002541
ORF1ab/nsp31788M1788IatGatA22B.1.3510.000059
ORF1ab/nsp31788M1788IatGatA22B.1.3690.00057
ORF1ab/nsp31788M1788IatGatA22B.1.4270.000101
ORF1ab/nsp31788M1788IatGatT22B.1.5210.00995
ORF1ab/nsp31788M1788IatGatA22B.1.5820.000981
ORF1ab/nsp31788M1788IatGatA12P.1.120.000484
ORF1ab/nsp31788M1788IatGatT12P.1.120.000484
ORF1ab/nsp31788M1788IatGatC11A.2.40.003367
ORF1ab/nsp31788M1788IatGatA11A.2.5.10.004808
ORF1ab/nsp31788M1788IatGatT11A.23.10.000704
ORF1ab/nsp31788M1788IatGatA11AD.20.000219
ORF1ab/nsp31788M1788IatGatT11AY.1160.000287
ORF1ab/nsp31788M1788IatGatA11AY.1180.000063
ORF1ab/nsp31788M1788IatGatT11AY.120.000316
ORF1ab/nsp31788M1788IatGatT11AY.1210.000135
ORF1ab/nsp31788M1788IatGatT11AY.140.000088
ORF1ab/nsp31788M1788IatGatT11AY.160.00038
ORF1ab/nsp31788M1788IatGatA11AY.200.000039
ORF1ab/nsp31788M1788IatGatT11AY.3.10.000085
ORF1ab/nsp31788M1788IatGatA11AY.46.10.001027
ORF1ab/nsp31788M1788IatGatA11AY.50.000021
ORF1ab/nsp31788M1788IatGatA11AY.5.30.000337
ORF1ab/nsp31788M1788IatGatA11AY.520.000814
ORF1ab/nsp31788M1788IatGatA11AY.570.000656
ORF1ab/nsp31788M1788IatGatA11AY.60.000041
ORF1ab/nsp31788M1788IatGatT11AY.640.000595
ORF1ab/nsp31788M1788IatGatT11AY.690.000187
ORF1ab/nsp31788M1788IatGatT11AY.9.10.000084
ORF1ab/nsp31788M1788IatGatT11AY.950.000761
ORF1ab/nsp31788M1788IatGatT11B.1.1.1340.011364
ORF1ab/nsp31788M1788IatGatA11B.1.1.1580.012195
ORF1ab/nsp31788M1788IatGatA11B.1.1.1610.003534
ORF1ab/nsp31788M1788IatGatA11B.1.1.1770.019231
ORF1ab/nsp31788M1788IatGatA11B.1.1.2070.001182
ORF1ab/nsp31788M1788IatGatC11B.1.1.2660.012195
ORF1ab/nsp31788M1788IatGatT11B.1.1.2940.001266
ORF1ab/nsp31788M1788IatGatA11B.1.1.3060.000438
ORF1ab/nsp31788M1788IatGatT11B.1.1.330.000421
ORF1ab/nsp31788M1788IatGatA11B.1.1.3370.003597
ORF1ab/nsp31788M1788IatGatA11B.1.1.3480.000796
ORF1ab/nsp31788M1788IatGatA11B.1.1.4020.011111
ORF1ab/nsp31788M1788IatGatA11B.1.1.50.008333
ORF1ab/nsp31788M1788IatGatT11B.1.1.500.000679
ORF1ab/nsp31788M1788IatGatA11B.1.1.630.000386
ORF1ab/nsp31788M1788IatGatA11B.1.1110.001175
ORF1ab/nsp31788M1788IatGatT11B.1.1460.004237
ORF1ab/nsp31788M1788IatGatT11B.1.1470.000756
ORF1ab/nsp31788M1788IatGatA11B.1.1570.002985
ORF1ab/nsp31788M1788IatGatA11B.1.1600.000031
ORF1ab/nsp31788M1788IatGatT11B.1.177.350.000691
ORF1ab/nsp31788M1788IatGatA11B.1.177.70.000165
ORF1ab/nsp31788M1788IatGatT11B.1.177.720.00339
ORF1ab/nsp31788M1788IatGatA11B.1.2110.025
ORF1ab/nsp31788M1788IatGatA11B.1.2210.000071
ORF1ab/nsp31788M1788IatGatA11B.1.2640.012346
ORF1ab/nsp31788M1788IatGatA11B.1.2790.000514
ORF1ab/nsp31788M1788IatGatA11B.1.3110.000275
ORF1ab/nsp31788M1788IatGatA11B.1.3240.001605
ORF1ab/nsp31788M1788IatGatT11B.1.3360.002439
ORF1ab/nsp31788M1788IatGatA11B.1.3490.000715
ORF1ab/nsp31788M1788IatGatT11B.1.360.000146
ORF1ab/nsp31788M1788IatGatA11B.1.3610.001289
ORF1ab/nsp31788M1788IatGatA11B.1.3630.012987
ORF1ab/nsp31788M1788IatGatA11B.1.3820.008929
ORF1ab/nsp31788M1788IatGatA11B.1.3950.007042
ORF1ab/nsp31788M1788IatGatA11B.1.4000.000429
ORF1ab/nsp31788M1788IatGatA11B.1.4430.004673
ORF1ab/nsp31788M1788IatGatA11B.1.4480.002625
ORF1ab/nsp31788M1788IatGatT11B.1.5090.000866
ORF1ab/nsp31788M1788IatGatA11B.1.5170.000427
ORF1ab/nsp31788M1788IatGatA11B.1.5230.002451
ORF1ab/nsp31788M1788IatGatC11B.1.5250.000113
ORF1ab/nsp31788M1788IatGatA11B.1.5300.007143
ORF1ab/nsp31788M1788IatGatT11B.1.5330.009615
ORF1ab/nsp31788M1788IatGatA11B.1.5650.00081
ORF1ab/nsp31788M1788IatGatA11B.1.5660.019231
ORF1ab/nsp31788M1788IatGatA11B.1.5740.002151
ORF1ab/nsp31788M1788IatGatA11B.1.5760.000907
ORF1ab/nsp31788M1788IatGatA11B.1.5850.027778
ORF1ab/nsp31788M1788IatGatA11B.1.6090.000479
ORF1ab/nsp31788M1788IatGatA11B.1.6120.002653
ORF1ab/nsp31788M1788IatGatA11B.1.621.10.000506
ORF1ab/nsp31788M1788IatGatT11B.1.6370.000073
ORF1ab/nsp31788M1788IatGatA11B.1.810.021277
ORF1ab/nsp31788M1788IatGatT11C.140.004329
ORF1ab/nsp31788M1788IatGatT11P.1.140.000048
ORF1ab/nsp31788M1788IatGatT11P.1.150.000232
ORF1ab/nsp31788M1788IatGatA11Q.10.000126
ORF1ab/nsp31788M1788IatGatT11Q.40.000455
ORF1ab/nsp31788M1788IatGatA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.