CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L979L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3979L979LL1797LsynCtaTta596859160.9912875654-5656
ORF1ab/nsp3979L979LL1797LsynctActG5968440.007372655654-5656
ORF1ab/nsp3979L979LL1797LsynctActT596870.001172925654-5656
ORF1ab/nsp3979L979LL1797LsynctActC596810.000167565654-5656

Details of the mutation L979L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3979L979LCtaTta59165968All0.001132
ORF1ab/nsp3979L979LctActG445968All0.000008
ORF1ab/nsp3979L979LctActT75968All0.000001
ORF1ab/nsp3979L979LctActC15968All0
ORF1ab/nsp3979L979LCtaTta841841B.1.5680.934444
ORF1ab/nsp3979L979LCtaTta571572AY.40.000889
ORF1ab/nsp3979L979LctActG1572AY.40.000002
ORF1ab/nsp3979L979LCtaTta526540B.1.1.70.000471
ORF1ab/nsp3979L979LctActG12540B.1.1.70.000011
ORF1ab/nsp3979L979LctActT2540B.1.1.70.000002
ORF1ab/nsp3979L979LCtaTta401404AY.250.002412
ORF1ab/nsp3979L979LctActG3404AY.250.000018
ORF1ab/nsp3979L979LCtaTta309311B.1.20.002721
ORF1ab/nsp3979L979LctActG2311B.1.20.000018
ORF1ab/nsp3979L979LCtaTta256261B.1.1770.003371
ORF1ab/nsp3979L979LctActG5261B.1.1770.000066
ORF1ab/nsp3979L979LCtaTta257258AY.1030.001596
ORF1ab/nsp3979L979LctActG1258AY.1030.000006
ORF1ab/nsp3979L979LCtaTta253253AY.50.005224
ORF1ab/nsp3979L979LCtaTta201201D.51
ORF1ab/nsp3979L979LCtaTta171172AY.440.001041
ORF1ab/nsp3979L979LctActG1172AY.440.000006
ORF1ab/nsp3979L979LCtaTta158159B.1.10.002866
ORF1ab/nsp3979L979LctActG1159B.1.10.000018
ORF1ab/nsp3979L979LCtaTta130131B.1.617.20.00049
ORF1ab/nsp3979L979LctActC1131B.1.617.20.000004
ORF1ab/nsp3979L979LCtaTta106106B.1.1600.003306
ORF1ab/nsp3979L979LCtaTta9090P.10.001418
ORF1ab/nsp3979L979LCtaTta8689B.10.000788
ORF1ab/nsp3979L979LctActG289B.10.000018
ORF1ab/nsp3979L979LctActT189B.10.000009
ORF1ab/nsp3979L979LCtaTta7878P.1.160.029181
ORF1ab/nsp3979L979LCtaTta6565AY.430.000288
ORF1ab/nsp3979L979LCtaTta6161B.1.6280.021494
ORF1ab/nsp3979L979LCtaTta5454B.1.3510.001605
ORF1ab/nsp3979L979LCtaTta5151AY.340.004945
ORF1ab/nsp3979L979LCtaTta4848AY.30.000477
ORF1ab/nsp3979L979LCtaTta4141AY.260.001161
ORF1ab/nsp3979L979LCtaTta4040AY.4.20.000868
ORF1ab/nsp3979L979LCtaTta4040B.1.4270.00202
ORF1ab/nsp3979L979LCtaTta2930AY.1020.000769
ORF1ab/nsp3979L979LctActG130AY.1020.000027
ORF1ab/nsp3979L979LCtaTta2929AY.1000.001334
ORF1ab/nsp3979L979LCtaTta2929B.1.2400.006251
ORF1ab/nsp3979L979LCtaTta2828B.1.1470.021164
ORF1ab/nsp3979L979LCtaTta2727AY.290.000426
ORF1ab/nsp3979L979LCtaTta2626AY.5.40.007194
ORF1ab/nsp3979L979LCtaTta2525B.1.4970.007869
ORF1ab/nsp3979L979LCtaTta2525B.1.6151
ORF1ab/nsp3979L979LCtaTta2424AY.200.000933
ORF1ab/nsp3979L979LCtaTta2324B.1.5260.000541
ORF1ab/nsp3979L979LctActG124B.1.5260.000024
ORF1ab/nsp3979L979LCtaTta2323B.1.617.10.002966
ORF1ab/nsp3979L979LCtaTta2121B.1.4290.000494
ORF1ab/nsp3979L979LCtaTta2020B.1.1.4160.0181
ORF1ab/nsp3979L979LCtaTta1919AY.1190.000671
ORF1ab/nsp3979L979LCtaTta1919B.1.214.20.011391
ORF1ab/nsp3979L979LCtaTta1717AY.420.000684
ORF1ab/nsp3979L979LCtaTta1717C.370.001973
ORF1ab/nsp3979L979LCtaTta1616AY.98.10.000775
ORF1ab/nsp3979L979LCtaTta1515AY.740.001735
ORF1ab/nsp3979L979LCtaTta1515AZ.20.012315
ORF1ab/nsp3979L979LCtaTta1515B.1.1.5190.000596
ORF1ab/nsp3979L979LCtaTta1414AY.1100.001578
ORF1ab/nsp3979L979LCtaTta1014AY.390.000247
ORF1ab/nsp3979L979LctActG314AY.390.000074
ORF1ab/nsp3979L979LctActT114AY.390.000025
ORF1ab/nsp3979L979LCtaTta1414B0.001789
ORF1ab/nsp3979L979LCtaTta1313B.1.177.830.019259
ORF1ab/nsp3979L979LCtaTta1313P.1.10.00413
ORF1ab/nsp3979L979LCtaTta1212B.1.160.270.181818
ORF1ab/nsp3979L979LCtaTta1111AY.330.000735
ORF1ab/nsp3979L979LCtaTta1111B.1.177.460.010101
ORF1ab/nsp3979L979LCtaTta1111B.1.177.60.010742
ORF1ab/nsp3979L979LCtaTta1010B.1.1.280.003112
ORF1ab/nsp3979L979LCtaTta1010B.1.177.440.005189
ORF1ab/nsp3979L979LCtaTta710B.1.360.001021
ORF1ab/nsp3979L979LctActG310B.1.360.000438
ORF1ab/nsp3979L979LCtaTta99AY.9.20.000331
ORF1ab/nsp3979L979LCtaTta99B.1.177.600.001966
ORF1ab/nsp3979L979LCtaTta99B.1.6210.000797
ORF1ab/nsp3979L979LCtaTta99P.1.140.00043
ORF1ab/nsp3979L979LCtaTta88B.1.5950.002088
ORF1ab/nsp3979L979LCtaTta77AY.450.000852
ORF1ab/nsp3979L979LCtaTta67AY.610.000629
ORF1ab/nsp3979L979LctActG17AY.610.000105
ORF1ab/nsp3979L979LCtaTta77B.1.1.2140.000388
ORF1ab/nsp3979L979LCtaTta77B.1.1.2220.001428
ORF1ab/nsp3979L979LCtaTta77B.1.2340.000924
ORF1ab/nsp3979L979LCtaTta67Q.80.000989
ORF1ab/nsp3979L979LctActT17Q.80.000165
ORF1ab/nsp3979L979LCtaTta66AY.1130.000854
ORF1ab/nsp3979L979LCtaTta66AY.1180.000376
ORF1ab/nsp3979L979LCtaTta66AY.470.000187
ORF1ab/nsp3979L979LCtaTta66AY.7.10.000676
ORF1ab/nsp3979L979LCtaTta66AY.750.000336
ORF1ab/nsp3979L979LCtaTta66AY.99.20.000553
ORF1ab/nsp3979L979LCtaTta66B.1.2210.000426
ORF1ab/nsp3979L979LCtaTta66B.1.36.290.003104
ORF1ab/nsp3979L979LCtaTta66B.1.466.20.002347
ORF1ab/nsp3979L979LCtaTta66B.1.499.10.666667
ORF1ab/nsp3979L979LCtaTta66B.1.5250.000679
ORF1ab/nsp3979L979LCtaTta66P.1.70.001916
ORF1ab/nsp3979L979LCtaTta55AY.29.10.001103
ORF1ab/nsp3979L979LCtaTta45AY.39.10.000158
ORF1ab/nsp3979L979LctActG15AY.39.10.00004
ORF1ab/nsp3979L979LCtaTta55AY.920.001436
ORF1ab/nsp3979L979LCtaTta55B.1.1.2840.000537
ORF1ab/nsp3979L979LCtaTta55B.1.6120.013263
ORF1ab/nsp3979L979LCtaTta55D.20.000375
ORF1ab/nsp3979L979LCtaTta44AY.1200.000149
ORF1ab/nsp3979L979LCtaTta44AY.3.10.000341
ORF1ab/nsp3979L979LCtaTta44AY.300.001583
ORF1ab/nsp3979L979LCtaTta44AY.370.001264
ORF1ab/nsp3979L979LCtaTta44AY.410.001176
ORF1ab/nsp3979L979LCtaTta44AY.46.10.004107
ORF1ab/nsp3979L979LCtaTta44AY.850.001709
ORF1ab/nsp3979L979LCtaTta44B.1.1.250.002274
ORF1ab/nsp3979L979LCtaTta44B.1.1.390.002039
ORF1ab/nsp3979L979LCtaTta44B.1.1.510.006873
ORF1ab/nsp3979L979LCtaTta44B.1.177.120.000607
ORF1ab/nsp3979L979LCtaTta44B.1.177.150.002524
ORF1ab/nsp3979L979LCtaTta44B.1.177.400.020619
ORF1ab/nsp3979L979LCtaTta44B.1.2430.000278
ORF1ab/nsp3979L979LCtaTta44B.1.2580.000266
ORF1ab/nsp3979L979LCtaTta44B.1.4040.005208
ORF1ab/nsp3979L979LCtaTta44B.1.5820.001963
ORF1ab/nsp3979L979LCtaTta44B.1.5960.000349
ORF1ab/nsp3979L979LCtaTta33A.2.50.001497
ORF1ab/nsp3979L979LCtaTta33AY.1170.000254
ORF1ab/nsp3979L979LCtaTta33AY.130.000483
ORF1ab/nsp3979L979LCtaTta33AY.160.001139
ORF1ab/nsp3979L979LCtaTta33AY.270.000194
ORF1ab/nsp3979L979LCtaTta33AY.360.000445
ORF1ab/nsp3979L979LCtaTta33AY.4.30.002525
ORF1ab/nsp3979L979LCtaTta33AY.670.001393
ORF1ab/nsp3979L979LCtaTta33AY.75.10.000541
ORF1ab/nsp3979L979LCtaTta33AY.90.000203
ORF1ab/nsp3979L979LctActG33B.1.1.3970.006757
ORF1ab/nsp3979L979LCtaTta33B.1.1110.003525
ORF1ab/nsp3979L979LCtaTta33B.1.177.100.002634
ORF1ab/nsp3979L979LCtaTta33B.1.177.810.000568
ORF1ab/nsp3979L979LCtaTta33B.1.177.860.00055
ORF1ab/nsp3979L979LCtaTta33B.1.3110.000824
ORF1ab/nsp3979L979LCtaTta33B.1.3240.004815
ORF1ab/nsp3979L979LCtaTta33B.1.351.30.002629
ORF1ab/nsp3979L979LCtaTta33B.1.3770.013699
ORF1ab/nsp3979L979LCtaTta33B.1.3960.002117
ORF1ab/nsp3979L979LCtaTta33C.36.30.001702
ORF1ab/nsp3979L979LCtaTta33P.1.150.000697
ORF1ab/nsp3979L979LCtaTta33P.20.00056
ORF1ab/nsp3979L979LCtaTta33P.30.004785
ORF1ab/nsp3979L979LCtaTta33Q.10.000379
ORF1ab/nsp3979L979LCtaTta33Q.40.001364
ORF1ab/nsp3979L979LCtaTta22AD.20.000438
ORF1ab/nsp3979L979LCtaTta22AY.1010.000981
ORF1ab/nsp3979L979LCtaTta22AY.1050.001286
ORF1ab/nsp3979L979LCtaTta22AY.1060.00067
ORF1ab/nsp3979L979LCtaTta22AY.1110.000366
ORF1ab/nsp3979L979LCtaTta22AY.116.10.000623
ORF1ab/nsp3979L979LCtaTta22AY.120.20.002571
ORF1ab/nsp3979L979LCtaTta22AY.230.000139
ORF1ab/nsp3979L979LCtaTta22AY.320.001065
ORF1ab/nsp3979L979LCtaTta22AY.380.000999
ORF1ab/nsp3979L979LCtaTta12AY.4.50.000107
ORF1ab/nsp3979L979LctActG12AY.4.50.000107
ORF1ab/nsp3979L979LCtaTta22AY.510.001818
ORF1ab/nsp3979L979LCtaTta22AY.600.001876
ORF1ab/nsp3979L979LCtaTta22AY.820.002714
ORF1ab/nsp3979L979LCtaTta22AY.840.000875
ORF1ab/nsp3979L979LCtaTta22AY.880.001768
ORF1ab/nsp3979L979LCtaTta22B.1.1.2740.010101
ORF1ab/nsp3979L979LCtaTta22B.1.1.3060.000877
ORF1ab/nsp3979L979LCtaTta22B.1.1.370.000386
ORF1ab/nsp3979L979LCtaTta22B.1.1.3980.006452
ORF1ab/nsp3979L979LCtaTta22B.1.177.540.001213
ORF1ab/nsp3979L979LCtaTta22B.1.258.40.006897
ORF1ab/nsp3979L979LCtaTta22B.1.2890.005319
ORF1ab/nsp3979L979LCtaTta22B.1.36.10.002281
ORF1ab/nsp3979L979LctActG22B.1.36.220.002415
ORF1ab/nsp3979L979LCtaTta22B.1.416.10.003125
ORF1ab/nsp3979L979LCtaTta22N.10.033898
ORF1ab/nsp3979L979LCtaTta22P.1.120.000968
ORF1ab/nsp3979L979LCtaTta11A0.000387
ORF1ab/nsp3979L979LCtaTta11A.2.5.30.010309
ORF1ab/nsp3979L979LCtaTta11A.23.10.000704
ORF1ab/nsp3979L979LCtaTta11AK.10.012658
ORF1ab/nsp3979L979LCtaTta11AY.1140.000231
ORF1ab/nsp3979L979LCtaTta11AY.1210.000135
ORF1ab/nsp3979L979LCtaTta11AY.140.000088
ORF1ab/nsp3979L979LCtaTta11AY.210.001898
ORF1ab/nsp3979L979LCtaTta11AY.34.10.00051
ORF1ab/nsp3979L979LCtaTta11AY.350.000233
ORF1ab/nsp3979L979LCtaTta11AY.4.2.10.000149
ORF1ab/nsp3979L979LCtaTta11AY.4.40.000409
ORF1ab/nsp3979L979LCtaTta11AY.460.000104
ORF1ab/nsp3979L979LCtaTta11AY.46.20.000635
ORF1ab/nsp3979L979LCtaTta11AY.46.40.000165
ORF1ab/nsp3979L979LCtaTta11AY.46.60.000072
ORF1ab/nsp3979L979LCtaTta11AY.480.000465
ORF1ab/nsp3979L979LCtaTta11AY.490.003195
ORF1ab/nsp3979L979LCtaTta11AY.500.000799
ORF1ab/nsp3979L979LCtaTta11AY.530.000288
ORF1ab/nsp3979L979LCtaTta11AY.550.000917
ORF1ab/nsp3979L979LCtaTta11AY.570.000656
ORF1ab/nsp3979L979LCtaTta11AY.590.00053
ORF1ab/nsp3979L979LCtaTta11AY.60.000041
ORF1ab/nsp3979L979LCtaTta11AY.640.000595
ORF1ab/nsp3979L979LCtaTta11AY.650.000533
ORF1ab/nsp3979L979LCtaTta11AY.690.000187
ORF1ab/nsp3979L979LCtaTta11AY.80.000606
ORF1ab/nsp3979L979LCtaTta11AY.9.10.000084
ORF1ab/nsp3979L979LCtaTta11AY.980.000079
ORF1ab/nsp3979L979LCtaTta11B.1.1.10.000327
ORF1ab/nsp3979L979LCtaTta11B.1.1.1290.009174
ORF1ab/nsp3979L979LCtaTta11B.1.1.1590.004673
ORF1ab/nsp3979L979LCtaTta11B.1.1.1890.001513
ORF1ab/nsp3979L979LCtaTta11B.1.1.2070.001182
ORF1ab/nsp3979L979LCtaTta11B.1.1.2160.00089
ORF1ab/nsp3979L979LCtaTta11B.1.1.2370.005405
ORF1ab/nsp3979L979LCtaTta11B.1.1.2980.000862
ORF1ab/nsp3979L979LCtaTta11B.1.1.3070.002532
ORF1ab/nsp3979L979LCtaTta11B.1.1.3150.008475
ORF1ab/nsp3979L979LCtaTta11B.1.1.3180.000302
ORF1ab/nsp3979L979LCtaTta11B.1.1.3220.008772
ORF1ab/nsp3979L979LCtaTta11B.1.1.3480.000796
ORF1ab/nsp3979L979LCtaTta11B.1.1.3620.005618
ORF1ab/nsp3979L979LCtaTta11B.1.1.3750.011905
ORF1ab/nsp3979L979LCtaTta11B.1.1.4480.002033
ORF1ab/nsp3979L979LCtaTta11B.1.1.5250.005464
ORF1ab/nsp3979L979LCtaTta11B.1.1080.005814
ORF1ab/nsp3979L979LCtaTta11B.1.1280.000635
ORF1ab/nsp3979L979LCtaTta11B.1.1460.004237
ORF1ab/nsp3979L979LCtaTta11B.1.160.300.002976
ORF1ab/nsp3979L979LCtaTta11B.1.177.170.000821
ORF1ab/nsp3979L979LCtaTta11B.1.177.210.000076
ORF1ab/nsp3979L979LCtaTta11B.1.177.50.001242
ORF1ab/nsp3979L979LCtaTta11B.1.177.570.000281
ORF1ab/nsp3979L979LCtaTta11B.1.177.580.001332
ORF1ab/nsp3979L979LCtaTta11B.1.177.620.001192
ORF1ab/nsp3979L979LCtaTta11B.1.177.70.000165
ORF1ab/nsp3979L979LCtaTta11B.1.177.750.001041
ORF1ab/nsp3979L979LCtaTta11B.1.177.80.000752
ORF1ab/nsp3979L979LCtaTta11B.1.1950.005025
ORF1ab/nsp3979L979LctActT11B.1.221.40.004167
ORF1ab/nsp3979L979LCtaTta11B.1.2320.000537
ORF1ab/nsp3979L979LCtaTta11B.1.2350.002519
ORF1ab/nsp3979L979LCtaTta11B.1.2470.014925
ORF1ab/nsp3979L979LCtaTta11B.1.3060.005714
ORF1ab/nsp3979L979LCtaTta11B.1.3200.001245
ORF1ab/nsp3979L979LCtaTta11B.1.3250.006897
ORF1ab/nsp3979L979LCtaTta11B.1.3490.000715
ORF1ab/nsp3979L979LCtaTta11B.1.351.10.038462
ORF1ab/nsp3979L979LCtaTta11B.1.36.70.004
ORF1ab/nsp3979L979LCtaTta11B.1.3670.000792
ORF1ab/nsp3979L979LCtaTta11B.1.4030.003268
ORF1ab/nsp3979L979LCtaTta11B.1.4200.010417
ORF1ab/nsp3979L979LCtaTta11B.1.438.10.000107
ORF1ab/nsp3979L979LCtaTta11B.1.4390.005917
ORF1ab/nsp3979L979LCtaTta11B.1.4590.004082
ORF1ab/nsp3979L979LCtaTta11B.1.4660.023256
ORF1ab/nsp3979L979LCtaTta11B.1.4960.125
ORF1ab/nsp3979L979LCtaTta11B.1.5030.002488
ORF1ab/nsp3979L979LCtaTta11B.1.5090.000866
ORF1ab/nsp3979L979LCtaTta11B.1.5100.026316
ORF1ab/nsp3979L979LCtaTta11B.1.5610.000397
ORF1ab/nsp3979L979LCtaTta11B.1.5650.00081
ORF1ab/nsp3979L979LCtaTta11B.1.5760.000907
ORF1ab/nsp3979L979LCtaTta11B.1.6090.000479
ORF1ab/nsp3979L979LCtaTta11B.1.617.30.002985
ORF1ab/nsp3979L979LCtaTta11B.1.6200.000946
ORF1ab/nsp3979L979LCtaTta11B.1.621.10.000506
ORF1ab/nsp3979L979LCtaTta11B.1.6230.000536
ORF1ab/nsp3979L979LCtaTta11B.1.6300.005236
ORF1ab/nsp3979L979LCtaTta11B.1.6370.000073
ORF1ab/nsp3979L979LCtaTta11B.1.80.001972
ORF1ab/nsp3979L979LCtaTta11B.60.00091
ORF1ab/nsp3979L979LCtaTta11C.10.002392
ORF1ab/nsp3979L979LCtaTta11C.20.016129
ORF1ab/nsp3979L979LCtaTta11C.2.10.006667
ORF1ab/nsp3979L979LctActT11C.350.000774
ORF1ab/nsp3979L979LCtaTta11N.50.001767
ORF1ab/nsp3979L979LCtaTta11P.1.170.000162
ORF1ab/nsp3979L979LCtaTta11Q.30.000145