CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 705 | L705L | L1523L | syn | Cta | Tta | 8450 | 8239 | 0.97503 | 4832-4834 |
ORF1ab/nsp3 | 705 | L705L | L1523L | syn | ctA | ctT | 8450 | 121 | 0.0143195 | 4832-4834 |
ORF1ab/nsp3 | 705 | L705L | L1523L | syn | ctA | ctG | 8450 | 78 | 0.00923077 | 4832-4834 |
ORF1ab/nsp3 | 705 | L705L | L1523L | syn | ctA | ctC | 8450 | 11 | 0.00130178 | 4832-4834 |
ORF1ab/nsp3 | 705 | L705L | L1523L | syn | CtA | TtG | 8450 | 1 | 0.000118343 | 4832-4834 |
Details of the mutation L705L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8239 | 8450 | All | 0.001576 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 121 | 8450 | All | 0.000023 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 78 | 8450 | All | 0.000015 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 11 | 8450 | All | 0.000002 |
ORF1ab/nsp3 | 705 | L705L | CtA | TtG | 1 | 8450 | All | 0 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2422 | 2422 | AY.2 | 0.862536 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1005 | 1016 | B.1.1.7 | 0.0009 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 10 | 1016 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 1 | 1016 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 611 | 613 | B.1.617.2 | 0.002301 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 613 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 613 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 535 | 540 | AY.4 | 0.000833 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 3 | 540 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 540 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 354 | 363 | B.1.2 | 0.003117 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 8 | 363 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 363 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 212 | 212 | Q.1 | 0.026781 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 155 | 202 | AY.44 | 0.000943 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 42 | 202 | AY.44 | 0.000256 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 5 | 202 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 192 | 192 | B.1.526 | 0.004513 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 178 | 178 | P.1 | 0.002804 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 168 | 168 | AY.25 | 0.00101 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 150 | 154 | AY.43 | 0.000665 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 3 | 154 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 154 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 150 | 150 | AY.9.2 | 0.005509 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 126 | 127 | AY.5 | 0.002602 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 127 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 121 | 121 | AY.117 | 0.010227 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 95 | 95 | AY.103 | 0.00059 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 92 | 92 | B.1.429 | 0.002165 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 78 | 80 | AY.14 | 0.006865 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 80 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 68 | 76 | B.1 | 0.000623 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 5 | 76 | B.1 | 0.000046 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 76 | B.1 | 0.000018 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 1 | 76 | B.1 | 0.000009 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 69 | 69 | D.2 | 0.005178 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 61 | 64 | B.1.1 | 0.001107 |
ORF1ab/nsp3 | 705 | L705L | CtA | TtG | 1 | 64 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 64 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 1 | 64 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 60 | 62 | C.37 | 0.006964 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 62 | C.37 | 0.000232 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 60 | 60 | B.1.1.214 | 0.003327 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 54 | 54 | P.1.14 | 0.002581 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 49 | 51 | B.1.351 | 0.001457 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 51 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 51 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 44 | 44 | AY.102 | 0.001167 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 41 | 41 | Q.2 | 0.025153 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 36 | 39 | AY.3 | 0.000358 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 3 | 39 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 39 | 39 | B.1.139 | 0.028592 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 32 | 32 | B.1.1.284 | 0.003437 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 31 | 31 | V.2 | 1 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 29 | 30 | B.1.177 | 0.000382 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 30 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 30 | 30 | B.1.177.60 | 0.006553 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 29 | 29 | B.1.160 | 0.000904 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 27 | 27 | B.1.258 | 0.001797 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 23 | 23 | AY.6 | 0.000946 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 21 | 21 | AY.71 | 0.009976 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 20 | 20 | AY.119 | 0.000706 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 20 | 20 | B.1.1.419 | 0.148148 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 19 | 19 | AY.62 | 0.008279 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 13 | 15 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 15 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 15 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 15 | 15 | B.1.1.28 | 0.004669 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 12 | 14 | AY.98 | 0.000948 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 2 | 14 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 13 | 14 | B.1.177.7 | 0.002143 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 14 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 13 | 13 | AY.37 | 0.004109 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 13 | 13 | B.1.1.50 | 0.008826 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 12 | 12 | AY.1 | 0.004749 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 10 | 11 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 11 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 11 | 11 | AY.75.1 | 0.001983 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 10 | 10 | AY.29.1 | 0.002205 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 9 | 10 | AY.36 | 0.001334 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 10 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 9 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 1 | 9 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | B.1.213 | 0.119403 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | B.1.1.359 | 0.194444 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctC | 7 | 7 | B.1.416 | 0.008883 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | B.1.1.316 | 0.00555 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 5 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 5 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | B.1.361 | 0.006443 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 4 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 2 | 4 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 4 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 4 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | B.1.146 | 0.016949 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 4 | 4 | N.3 | 0.023256 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AA.6 | 0.048387 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 2 | 3 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.177.42 | 0.002683 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.340 | 0.008584 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 2 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 2 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | B.46 | 0.041667 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | D.5 | 0.00995 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AA.7 | 0.009174 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.401 | 0.066667 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.379 | 0.017241 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 705 | L705L | ctA | ctT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 705 | L705L | Cta | Tta | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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