CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 651 | L651L | L1469L | syn | ctC | ctT | 1168 | 1055 | 0.903253 | 4670-4672 |
ORF1ab/nsp3 | 651 | L651L | L1469L | syn | ctC | ctA | 1168 | 103 | 0.0881849 | 4670-4672 |
ORF1ab/nsp3 | 651 | L651L | L1469L | syn | CtC | TtA | 1168 | 4 | 0.00342466 | 4670-4672 |
ORF1ab/nsp3 | 651 | L651L | L1469L | syn | ctC | ctG | 1168 | 3 | 0.00256849 | 4670-4672 |
ORF1ab/nsp3 | 651 | L651L | L1469L | syn | CtC | TtG | 1168 | 3 | 0.00256849 | 4670-4672 |
Details of the mutation L651L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1055 | 1168 | All | 0.000202 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 103 | 1168 | All | 0.00002 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtA | 4 | 1168 | All | 0.000001 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctG | 3 | 1168 | All | 0.000001 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtG | 3 | 1168 | All | 0.000001 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 276 | 278 | AY.4 | 0.00043 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 278 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 160 | 180 | B.1.1.7 | 0.000143 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 20 | 180 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 145 | 145 | B.1.526 | 0.003408 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 86 | 86 | B.1.36.2 | 0.924731 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 35 | 47 | B.1 | 0.000321 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 7 | 47 | B.1 | 0.000064 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctG | 2 | 47 | B.1 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtG | 2 | 47 | B.1 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtA | 1 | 47 | B.1 | 0.000009 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 23 | 25 | AY.5 | 0.000475 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 25 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 22 | 23 | AY.25 | 0.000132 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 23 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 21 | 21 | AY.13 | 0.003381 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 13 | 20 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 6 | 20 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtA | 1 | 20 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 13 | 18 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 18 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtA | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctG | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtG | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 10 | 17 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 7 | 17 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 11 | 17 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 6 | 17 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 9 | 15 | P.1 | 0.000142 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 6 | 15 | P.1 | 0.000095 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 11 | 12 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 12 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 7 | 7 | B.1.36.22 | 0.008454 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 5 | 6 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 6 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 5 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 5 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 5 | 5 | B.1.351.5 | 0.002998 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 5 | 5 | B.1.36.33 | 0.037879 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 3 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 3 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 3 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 3 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 651 | L651L | CtC | TtA | 1 | 3 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 3 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 3 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 2 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 2 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.1.93 | 0.025641 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 651 | L651L | ctC | ctT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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