CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L641F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3641L641FL1459FnonsynttGttT1231170.9512194640-4642
ORF1ab/nsp3641L641FL1459FnonsynttGttC12360.04878054640-4642

Details of the mutation L641F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3641L641FttGttT117123All0.000022
ORF1ab/nsp3641L641FttGttC6123All0.000001
ORF1ab/nsp3641L641FttGttT3434B.1.1770.000448
ORF1ab/nsp3641L641FttGttT1516B.1.1.70.000013
ORF1ab/nsp3641L641FttGttC116B.1.1.70.000001
ORF1ab/nsp3641L641FttGttT88B.1.3510.000238
ORF1ab/nsp3641L641FttGttT66B.1.10.000109
ORF1ab/nsp3641L641FttGttT55AY.40.000008
ORF1ab/nsp3641L641FttGttT340.166667
ORF1ab/nsp3641L641FttGttC140.055556
ORF1ab/nsp3641L641FttGttT44B.10.000037
ORF1ab/nsp3641L641FttGttT33AY.750.000168
ORF1ab/nsp3641L641FttGttT33Q.30.000435
ORF1ab/nsp3641L641FttGttT22AY.250.000012
ORF1ab/nsp3641L641FttGttT22AY.290.000032
ORF1ab/nsp3641L641FttGttT22AY.4.30.001684
ORF1ab/nsp3641L641FttGttT22AY.430.000009
ORF1ab/nsp3641L641FttGttC12AY.440.000006
ORF1ab/nsp3641L641FttGttT12AY.440.000006
ORF1ab/nsp3641L641FttGttT22AY.50.000041
ORF1ab/nsp3641L641FttGttT22B.1.2210.000142
ORF1ab/nsp3641L641FttGttT22B.1.4290.000047
ORF1ab/nsp3641L641FttGttC11AW.10.003049
ORF1ab/nsp3641L641FttGttT11AY.1000.000046
ORF1ab/nsp3641L641FttGttT11AY.1030.000006
ORF1ab/nsp3641L641FttGttC11AY.390.000025
ORF1ab/nsp3641L641FttGttT11AY.4.20.000022
ORF1ab/nsp3641L641FttGttT11AY.4.50.000107
ORF1ab/nsp3641L641FttGttT11AY.460.000104
ORF1ab/nsp3641L641FttGttT11AY.540.000095
ORF1ab/nsp3641L641FttGttT11AY.7.10.000113
ORF1ab/nsp3641L641FttGttT11B.1.1.2940.001266
ORF1ab/nsp3641L641FttGttT11B.1.1.390.00051
ORF1ab/nsp3641L641FttGttT11B.1.177.730.000566
ORF1ab/nsp3641L641FttGttT11B.1.2100.002132
ORF1ab/nsp3641L641FttGttT11B.1.2580.000067
ORF1ab/nsp3641L641FttGttT11B.1.36.160.001425
ORF1ab/nsp3641L641FttGttT11B.1.5240.001406
ORF1ab/nsp3641L641FttGttT11B.1.5960.000087
ORF1ab/nsp3641L641FttGttT11B.1.617.20.000004
ORF1ab/nsp3641L641FttGttT11B.1.621.10.000506
ORF1ab/nsp3641L641FttGttT11B.1.6230.000536
ORF1ab/nsp3641L641FttGttC11D.20.000075
ORF1ab/nsp3641L641FttGttT11P.1.160.000374
ORF1ab/nsp3641L641FttGttT11Q.20.000613
ORF1ab/nsp3641L641FttGttT11Q.40.000455