CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 623 | L623L | L1441L | syn | Cta | Tta | 6503 | 6429 | 0.988621 | 4586-4588 |
ORF1ab/nsp3 | 623 | L623L | L1441L | syn | ctA | ctG | 6503 | 60 | 0.00922651 | 4586-4588 |
ORF1ab/nsp3 | 623 | L623L | L1441L | syn | ctA | ctT | 6503 | 9 | 0.00138398 | 4586-4588 |
ORF1ab/nsp3 | 623 | L623L | L1441L | syn | ctA | ctC | 6503 | 5 | 0.000768876 | 4586-4588 |
Details of the mutation L623L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6429 | 6503 | All | 0.00123 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 60 | 6503 | All | 0.000011 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctT | 9 | 6503 | All | 0.000002 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctC | 5 | 6503 | All | 0.000001 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1135 | 1139 | B.1.1.7 | 0.001016 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 2 | 1139 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctT | 1 | 1139 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctC | 1 | 1139 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 644 | 649 | AY.4 | 0.001002 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 3 | 649 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctC | 2 | 649 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 340 | 340 | AY.39.1 | 0.013469 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 331 | 331 | AY.44 | 0.002015 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 305 | 310 | B.1.617.2 | 0.001148 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 5 | 310 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 204 | 205 | AY.25 | 0.001227 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 205 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 193 | 195 | B.1.2 | 0.001699 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 2 | 195 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 168 | 168 | AY.74 | 0.019429 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 151 | 154 | B.1 | 0.001383 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctT | 2 | 154 | B.1 | 0.000018 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 154 | B.1 | 0.000009 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 152 | 152 | AY.47 | 0.004728 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 142 | 142 | AY.3 | 0.001412 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 123 | 133 | AY.43 | 0.000545 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 10 | 133 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 100 | 106 | P.1 | 0.001575 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 6 | 106 | P.1 | 0.000095 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 78 | 83 | B.1.1 | 0.001415 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctT | 5 | 83 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 79 | 82 | AY.103 | 0.000491 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 3 | 82 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 82 | 82 | B.1.177 | 0.00108 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 74 | 74 | AY.102 | 0.001962 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 71 | 71 | AY.86 | 0.058921 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 65 | 65 | B.1.258 | 0.004326 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 62 | 63 | AY.5 | 0.00128 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 63 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 62 | 62 | B.1.160.27 | 0.939394 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 59 | 59 | B.1.1.420 | 0.059356 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 51 | 51 | B.1.427 | 0.002575 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 50 | 50 | B.1.526 | 0.001175 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 45 | 49 | AY.39 | 0.001112 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 4 | 49 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 49 | 49 | B.1.160 | 0.001528 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 48 | 48 | AY.98.1 | 0.002325 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 41 | 41 | AY.46.6 | 0.002961 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 39 | 39 | B.1.258.17 | 0.004055 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 39 | 39 | B.1.351 | 0.001159 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 38 | 38 | AY.111 | 0.00696 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 35 | 35 | AY.26 | 0.000991 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 30 | 30 | B.1.139 | 0.021994 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 29 | 29 | B.1.177.56 | 0.019359 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 28 | 28 | B.1.1.72 | 0.848485 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 28 | 28 | B.1.243 | 0.001948 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 27 | 27 | AY.29 | 0.000426 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 23 | 27 | AY.75 | 0.001289 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 4 | 27 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 26 | 26 | B.1.621 | 0.002301 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 25 | 25 | B.1.637 | 0.001827 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 23 | 24 | B.1.1.28 | 0.007158 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctC | 1 | 24 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 24 | 24 | B.1.177.21 | 0.001835 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 23 | 23 | B.1.617.1 | 0.002966 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 22 | 22 | AY.4.2 | 0.000477 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 21 | 21 | AY.54 | 0.002002 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 21 | 21 | B.1.177.86 | 0.003853 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 20 | 20 | B.1.1.519 | 0.000794 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 19 | 19 | B.1.499 | 0.019958 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 19 | 19 | Q.1 | 0.0024 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 16 | 17 | B.1.582 | 0.007851 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctT | 1 | 17 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 15 | 15 | B.1.190 | 0.15 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 15 | 15 | B.1.234 | 0.001979 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 13 | 14 | AY.119 | 0.000459 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 14 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 14 | 14 | AY.99.2 | 0.00129 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 14 | 14 | B.1.177.4 | 0.002955 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 14 | 14 | B.1.305 | 0.030108 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 14 | 14 | B.1.588 | 0.012739 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 13 | 13 | AY.93 | 0.00355 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 13 | 13 | B.1.469 | 0.046931 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 12 | 12 | AY.4.4 | 0.00491 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.1.1.10 | 0.011148 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.1.1.33 | 0.004209 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.1.367 | 0.007924 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | B.6.6 | 0.008889 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 9 | 9 | AY.107 | 0.004194 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 9 | 9 | AY.30 | 0.003562 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 9 | 9 | P.1.17 | 0.001456 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | AD.2 | 0.001752 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | AY.4.3 | 0.006734 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | B.1.1.198 | 0.011747 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | B.1.222 | 0.013536 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | B.1.1.70 | 0.002387 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | B.1.110.3 | 0.005029 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 6 | 6 | AY.96 | 0.012448 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.1.372 | 0.004132 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.471 | 0.016393 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 5 | AY.109 | 0.002959 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctC | 1 | 5 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | AY.35 | 0.001165 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.1.255 | 0.012121 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.1.373 | 0.095238 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.177.16 | 0.002658 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.1.285 | 0.019608 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | C.1.2 | 0.012766 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.31 | 0.133333 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.177.80 | 0.003824 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.235 | 0.005038 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.245 | 0.0625 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 2 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 2 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.495 | 0.018182 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | C.11 | 0.021277 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.296 | 0.018182 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 623 | L623L | ctA | ctG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.274 | 0.011905 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.27 | 0.015385 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 623 | L623L | Cta | Tta | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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