CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L364L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3364L364LL1182LsynctCctT12770127060.9949883809-3811
ORF1ab/nsp3364L364LL1182LsynctCctA12770590.00462023809-3811
ORF1ab/nsp3364L364LL1182LsynctCctG1277050.0003915433809-3811

Details of the mutation L364L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3364L364LctCctT1270612770All0.00243
ORF1ab/nsp3364L364LctCctA5912770All0.000011
ORF1ab/nsp3364L364LctCctG512770All0.000001
ORF1ab/nsp3364L364LctCctT57695771B.1.617.20.021723
ORF1ab/nsp3364L364LctCctA25771B.1.617.20.000008
ORF1ab/nsp3364L364LctCctT43004300AY.980.339679
ORF1ab/nsp3364L364LctCctT13321369B.1.1.70.001192
ORF1ab/nsp3364L364LctCctA371369B.1.1.70.000033
ORF1ab/nsp3364L364LctCctT119120AY.40.000185
ORF1ab/nsp3364L364LctCctA1120AY.40.000002
ORF1ab/nsp3364L364LctCctT110110AY.540.010488
ORF1ab/nsp3364L364LctCctT7676AY.440.000463
ORF1ab/nsp3364L364LctCctT6869B.10.000623
ORF1ab/nsp3364L364LctCctA169B.10.000009
ORF1ab/nsp3364L364LctCctT5154AY.1030.000317
ORF1ab/nsp3364L364LctCctA354AY.1030.000019
ORF1ab/nsp3364L364LctCctT4545B.1.20.000396
ORF1ab/nsp3364L364LctCctT3838B.1.4620.275362
ORF1ab/nsp3364L364LctCctT3336AY.30.000328
ORF1ab/nsp3364L364LctCctA336AY.30.00003
ORF1ab/nsp3364L364LctCctT3333AY.430.000146
ORF1ab/nsp3364L364LctCctT3131AY.5.30.010459
ORF1ab/nsp3364L364LctCctT3031B.1.10.000544
ORF1ab/nsp3364L364LctCctA131B.1.10.000018
ORF1ab/nsp3364L364LctCctT3031B.1.1600.000936
ORF1ab/nsp3364L364LctCctA131B.1.1600.000031
ORF1ab/nsp3364L364LctCctT2929B.1.1.401
ORF1ab/nsp3364L364LctCctT2727AY.1020.000716
ORF1ab/nsp3364L364LctCctT2727AY.600.025328
ORF1ab/nsp3364L364LctCctT2626AY.50.000537
ORF1ab/nsp3364L364LctCctT2222AY.390.000544
ORF1ab/nsp3364L364LctCctT2222P.10.000347
ORF1ab/nsp3364L364LctCctT1818AY.260.00051
ORF1ab/nsp3364L364LctCctT1717B.1.258.170.001768
ORF1ab/nsp3364L364LctCctT1416AY.250.000084
ORF1ab/nsp3364L364LctCctA216AY.250.000012
ORF1ab/nsp3364L364LctCctT1515AY.460.001561
ORF1ab/nsp3364L364LctCctT1414AY.1000.000644
ORF1ab/nsp3364L364LctCctT1111AY.1140.002542
ORF1ab/nsp3364L364LctCctT1111B.1.1770.000145
ORF1ab/nsp3364L364LctCctT1111B.1.621.10.005564
ORF1ab/nsp3364L364LctCctT1010AY.320.005325
ORF1ab/nsp3364L364LctCctT1010AY.98.10.000484
ORF1ab/nsp3364L364LctCctT99B.1.2340.001187
ORF1ab/nsp3364L364LctCctT99B.1.5960.000784
ORF1ab/nsp3364L364LctCctT99B.1.910.018672
ORF1ab/nsp3364L364LctCctT99P.1.70.002874
ORF1ab/nsp3364L364LctCctT88B.1.1.3170.003294
ORF1ab/nsp3364L364LctCctT88B.1.1.5190.000318
ORF1ab/nsp3364L364LctCctT77AY.450.000852
ORF1ab/nsp3364L364LctCctT77AY.9.20.000257
ORF1ab/nsp3364L364LctCctT77B0.000895
ORF1ab/nsp3364L364LctCctT77B.1.110.30.005029
ORF1ab/nsp3364L364LctCctT56AY.290.000079
ORF1ab/nsp3364L364LctCctA16AY.290.000016
ORF1ab/nsp3364L364LctCctT66AY.350.001398
ORF1ab/nsp3364L364LctCctT66AY.740.000694
ORF1ab/nsp3364L364LctCctT66B.1.177.600.001311
ORF1ab/nsp3364L364LctCctT66B.1.4990.006303
ORF1ab/nsp3364L364LctCctT55AY.1060.001674
ORF1ab/nsp3364L364LctCctT55AY.1170.000423
ORF1ab/nsp3364L364LctCctT55AY.1190.000177
ORF1ab/nsp3364L364LctCctT55AY.200.000194
ORF1ab/nsp3364L364LctCctT55AY.230.000349
ORF1ab/nsp3364L364LctCctT55AY.610.000524
ORF1ab/nsp3364L364LctCctG55B.1.3290.003038
ORF1ab/nsp3364L364LctCctT55Q.80.000825
ORF1ab/nsp3364L364LctCctT44AY.1080.00441
ORF1ab/nsp3364L364LctCctT44AY.4.20.000087
ORF1ab/nsp3364L364LctCctT44AY.750.000224
ORF1ab/nsp3364L364LctCctT44AY.770.00451
ORF1ab/nsp3364L364LctCctT44AY.9.10.000335
ORF1ab/nsp3364L364LctCctT44B.1.3510.000119
ORF1ab/nsp3364L364LctCctT44B.1.5260.000094
ORF1ab/nsp3364L364LctCctT44P.20.000747
ORF1ab/nsp3364L364LctCctT33AY.4.40.001227
ORF1ab/nsp3364L364LctCctT33AY.46.60.000217
ORF1ab/nsp3364L364LctCctT33AY.60.000123
ORF1ab/nsp3364L364LctCctT33AY.730.001996
ORF1ab/nsp3364L364LctCctT33B.1.1.330.001263
ORF1ab/nsp3364L364LctCctT33B.1.1.3680.009259
ORF1ab/nsp3364L364LctCctT33B.1.177.650.001996
ORF1ab/nsp3364L364LctCctT33B.1.177.70.000495
ORF1ab/nsp3364L364LctCctT33B.1.4290.000071
ORF1ab/nsp3364L364LctCctT33B.1.5250.000339
ORF1ab/nsp3364L364LctCctT33B.1.617.10.000387
ORF1ab/nsp3364L364LctCctT33P.1.150.000697
ORF1ab/nsp3364L364LctCctT33R.10.00027
ORF1ab/nsp3364L364LctCctT22AY.1090.001479
ORF1ab/nsp3364L364LctCctT22AY.1100.000225
ORF1ab/nsp3364L364LctCctA12AY.270.000065
ORF1ab/nsp3364L364LctCctT12AY.270.000065
ORF1ab/nsp3364L364LctCctT22AY.300.000791
ORF1ab/nsp3364L364LctCctT22AY.340.000194
ORF1ab/nsp3364L364LctCctT22AY.400.001929
ORF1ab/nsp3364L364LctCctT22AY.420.00008
ORF1ab/nsp3364L364LctCctT12AY.520.000814
ORF1ab/nsp3364L364LctCctA12AY.520.000814
ORF1ab/nsp3364L364LctCctT12AY.550.000917
ORF1ab/nsp3364L364LctCctA12AY.550.000917
ORF1ab/nsp3364L364LctCctT22AY.680.000547
ORF1ab/nsp3364L364LctCctT22AY.710.00095
ORF1ab/nsp3364L364LctCctT22AY.800.002257
ORF1ab/nsp3364L364LctCctT22AY.820.002714
ORF1ab/nsp3364L364LctCctT22AY.840.000875
ORF1ab/nsp3364L364LctCctT22AY.860.00166
ORF1ab/nsp3364L364LctCctT22AY.870.001665
ORF1ab/nsp3364L364LctCctT22AY.880.001768
ORF1ab/nsp3364L364LctCctT22AY.990.002099
ORF1ab/nsp3364L364LctCctT22AY.99.20.000184
ORF1ab/nsp3364L364LctCctT22B.1.1.2140.000111
ORF1ab/nsp3364L364LctCctT22B.1.1.2940.002532
ORF1ab/nsp3364L364LctCctT22B.1.1.520.02439
ORF1ab/nsp3364L364LctCctT22B.1.1390.001466
ORF1ab/nsp3364L364LctCctT22B.1.160.160.001859
ORF1ab/nsp3364L364LctCctT22B.1.160.170.003401
ORF1ab/nsp3364L364LctCctT22B.1.177.730.001133
ORF1ab/nsp3364L364LctCctT22B.1.177.750.002081
ORF1ab/nsp3364L364LctCctT22B.1.2060.001631
ORF1ab/nsp3364L364LctCctT22B.1.2430.000139
ORF1ab/nsp3364L364LctCctT22B.1.258.30.00335
ORF1ab/nsp3364L364LctCctT22B.1.4090.001563
ORF1ab/nsp3364L364LctCctT22B.1.4130.008511
ORF1ab/nsp3364L364LctCctA12B.1.438.10.000107
ORF1ab/nsp3364L364LctCctT12B.1.438.10.000107
ORF1ab/nsp3364L364LctCctT22C.10.004785
ORF1ab/nsp3364L364LctCctT22C.370.000232
ORF1ab/nsp3364L364LctCctT22D.20.00015
ORF1ab/nsp3364L364LctCctT110.055556
ORF1ab/nsp3364L364LctCctT11A.10.000282
ORF1ab/nsp3364L364LctCctT11A.50.001923
ORF1ab/nsp3364L364LctCctT11AY.1040.001984
ORF1ab/nsp3364L364LctCctT11AY.1050.000643
ORF1ab/nsp3364L364LctCctT11AY.1070.000466
ORF1ab/nsp3364L364LctCctT11AY.1110.000183
ORF1ab/nsp3364L364LctCctT11AY.116.10.000311
ORF1ab/nsp3364L364LctCctT11AY.1210.000135
ORF1ab/nsp3364L364LctCctT11AY.160.00038
ORF1ab/nsp3364L364LctCctT11AY.16.10.00047
ORF1ab/nsp3364L364LctCctT11AY.240.000431
ORF1ab/nsp3364L364LctCctT11AY.29.10.000221
ORF1ab/nsp3364L364LctCctT11AY.3.10.000085
ORF1ab/nsp3364L364LctCctT11AY.370.000316
ORF1ab/nsp3364L364LctCctT11AY.380.000499
ORF1ab/nsp3364L364LctCctT11AY.46.50.000198
ORF1ab/nsp3364L364LctCctT11AY.470.000031
ORF1ab/nsp3364L364LctCctT11AY.5.40.000277
ORF1ab/nsp3364L364LctCctT11AY.650.000533
ORF1ab/nsp3364L364LctCctT11AY.70.000196
ORF1ab/nsp3364L364LctCctT11AY.780.001541
ORF1ab/nsp3364L364LctCctT11AY.790.001211
ORF1ab/nsp3364L364LctCctT11AY.850.000427
ORF1ab/nsp3364L364LctCctT11AY.90.000068
ORF1ab/nsp3364L364LctCctT11AY.900.000684
ORF1ab/nsp3364L364LctCctT11AY.920.000287
ORF1ab/nsp3364L364LctCctT11B.1.1.10.000327
ORF1ab/nsp3364L364LctCctT11B.1.1.1760.000439
ORF1ab/nsp3364L364LctCctT11B.1.1.2030.016949
ORF1ab/nsp3364L364LctCctT11B.1.1.2070.001182
ORF1ab/nsp3364L364LctCctT11B.1.1.2220.000204
ORF1ab/nsp3364L364LctCctT11B.1.1.2430.004082
ORF1ab/nsp3364L364LctCctT11B.1.1.2550.00303
ORF1ab/nsp3364L364LctCctT11B.1.1.280.000311
ORF1ab/nsp3364L364LctCctT11B.1.1.3060.000438
ORF1ab/nsp3364L364LctCctT11B.1.1.3890.006061
ORF1ab/nsp3364L364LctCctT11B.1.1.3980.003226
ORF1ab/nsp3364L364LctCctT11B.1.1.4090.002833
ORF1ab/nsp3364L364LctCctT11B.1.1.4120.007634
ORF1ab/nsp3364L364LctCctT11B.1.1.4160.000905
ORF1ab/nsp3364L364LctCctT11B.1.1.4640.001473
ORF1ab/nsp3364L364LctCctT11B.1.1.580.005376
ORF1ab/nsp3364L364LctCctT11B.1.1.630.000386
ORF1ab/nsp3364L364LctCctT11B.1.1110.001175
ORF1ab/nsp3364L364LctCctT11B.1.1150.021739
ORF1ab/nsp3364L364LctCctT11B.1.1240.007812
ORF1ab/nsp3364L364LctCctT11B.1.1310.008772
ORF1ab/nsp3364L364LctCctT11B.1.177.120.000152
ORF1ab/nsp3364L364LctCctA11B.1.177.230.003236
ORF1ab/nsp3364L364LctCctT11B.1.177.40.000211
ORF1ab/nsp3364L364LctCctT11B.1.177.60.000977
ORF1ab/nsp3364L364LctCctT11B.1.177.870.000728
ORF1ab/nsp3364L364LctCctT11B.1.2100.002132
ORF1ab/nsp3364L364LctCctT11B.1.2210.000071
ORF1ab/nsp3364L364LctCctT11B.1.2400.000216
ORF1ab/nsp3364L364LctCctT11B.1.3560.001727
ORF1ab/nsp3364L364LctCctT11B.1.360.000146
ORF1ab/nsp3364L364LctCctT11B.1.36.80.001
ORF1ab/nsp3364L364LctCctT11B.1.3690.000285
ORF1ab/nsp3364L364LctCctT11B.1.3960.000706
ORF1ab/nsp3364L364LctCctT11B.1.4330.003195
ORF1ab/nsp3364L364LctCctT11B.1.4660.023256
ORF1ab/nsp3364L364LctCctA11B.1.466.20.000391
ORF1ab/nsp3364L364LctCctT11B.1.5090.000866
ORF1ab/nsp3364L364LctCctT11B.1.5680.001111
ORF1ab/nsp3364L364LctCctT11B.1.5800.004065
ORF1ab/nsp3364L364LctCctT11B.1.595.10.005848
ORF1ab/nsp3364L364LctCctT11B.1.6210.000089
ORF1ab/nsp3364L364LctCctA11B.6.60.000889
ORF1ab/nsp3364L364LctCctT11C.1.20.004255
ORF1ab/nsp3364L364LctCctT11C.140.004329
ORF1ab/nsp3364L364LctCctT11P.1.140.000048
ORF1ab/nsp3364L364LctCctT11P.1.20.001156
ORF1ab/nsp3364L364LctCctT11P.30.001595
ORF1ab/nsp3364L364LctCctT11Q.10.000126
ORF1ab/nsp3364L364LctCctT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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