CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L312L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3312L312LL1130LsynctTctC2221820.819823653-3655
ORF1ab/nsp3312L312LL1130LsynctTctG222310.139643653-3655
ORF1ab/nsp3312L312LL1130LsynctTctA22270.03153153653-3655
ORF1ab/nsp3312L312LL1130LsynCtTTtA22220.009009013653-3655

Details of the mutation L312L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3312L312LctTctC182222All0.000035
ORF1ab/nsp3312L312LctTctG31222All0.000006
ORF1ab/nsp3312L312LctTctA7222All0.000001
ORF1ab/nsp3312L312LCtTTtA2222All0
ORF1ab/nsp3312L312LctTctC7878AY.40.000121
ORF1ab/nsp3312L312LctTctC5759B.1.1.70.000051
ORF1ab/nsp3312L312LctTctG259B.1.1.70.000002
ORF1ab/nsp3312L312LctTctC1214P.20.00224
ORF1ab/nsp3312L312LctTctG214P.20.000373
ORF1ab/nsp3312L312LctTctG47B.1.617.20.000015
ORF1ab/nsp3312L312LctTctC27B.1.617.20.000008
ORF1ab/nsp3312L312LctTctA17B.1.617.20.000004
ORF1ab/nsp3312L312LctTctG56B.1.2430.000348
ORF1ab/nsp3312L312LctTctC16B.1.2430.00007
ORF1ab/nsp3312L312LctTctC55AY.440.00003
ORF1ab/nsp3312L312LctTctA55AY.90.000338
ORF1ab/nsp3312L312LctTctC240.111111
ORF1ab/nsp3312L312LCtTTtA240.111111
ORF1ab/nsp3312L312LctTctC44B.1.5030.00995
ORF1ab/nsp3312L312LctTctG33AY.1000.000138
ORF1ab/nsp3312L312LctTctG23AY.250.000012
ORF1ab/nsp3312L312LctTctC13AY.250.000006
ORF1ab/nsp3312L312LctTctG23AY.430.000009
ORF1ab/nsp3312L312LctTctC13AY.430.000004
ORF1ab/nsp3312L312LctTctG33B.1.1.470.016043
ORF1ab/nsp3312L312LctTctC12AY.39.10.00004
ORF1ab/nsp3312L312LctTctG12AY.39.10.00004
ORF1ab/nsp3312L312LctTctC12B.1.10.000018
ORF1ab/nsp3312L312LctTctG12B.1.10.000018
ORF1ab/nsp3312L312LctTctC22B.1.1.3710.020833
ORF1ab/nsp3312L312LctTctC22B.1.1770.000026
ORF1ab/nsp3312L312LctTctC22B.1.20.000018
ORF1ab/nsp3312L312LctTctG11AY.1170.000085
ORF1ab/nsp3312L312LctTctC11AY.1180.000063
ORF1ab/nsp3312L312LctTctC11AY.4.40.000409
ORF1ab/nsp3312L312LctTctC11AY.470.000031
ORF1ab/nsp3312L312LctTctC11AY.490.003195
ORF1ab/nsp3312L312LctTctC11AY.540.000095
ORF1ab/nsp3312L312LctTctG11AY.550.000917
ORF1ab/nsp3312L312LctTctC11AY.650.000533
ORF1ab/nsp3312L312LctTctC11AY.690.000187
ORF1ab/nsp3312L312LctTctC11AY.880.000884
ORF1ab/nsp3312L312LctTctC11B.10.000009
ORF1ab/nsp3312L312LctTctG11B.1.1.4340.000349
ORF1ab/nsp3312L312LctTctA11B.1.177.810.000189
ORF1ab/nsp3312L312LctTctG11B.1.258.170.000104
ORF1ab/nsp3312L312LctTctC11B.1.360.000146
ORF1ab/nsp3312L312LctTctG11B.1.4000.000429
ORF1ab/nsp3312L312LctTctC11B.60.00091
ORF1ab/nsp3312L312LctTctG11P.10.000016