CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1857 | L1857L | L2675L | syn | ctC | ctT | 7238 | 6971 | 0.963111 | 8288-8290 |
ORF1ab/nsp3 | 1857 | L1857L | L2675L | syn | ctC | ctG | 7238 | 175 | 0.0241779 | 8288-8290 |
ORF1ab/nsp3 | 1857 | L1857L | L2675L | syn | ctC | ctA | 7238 | 92 | 0.0127107 | 8288-8290 |
Details of the mutation L1857L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6971 | 7238 | All | 0.001333 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 175 | 7238 | All | 0.000033 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 92 | 7238 | All | 0.000018 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2133 | 2143 | B.1.1.7 | 0.00191 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 8 | 2143 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 2 | 2143 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 657 | 659 | B.1.617.2 | 0.002474 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 2 | 659 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 319 | 323 | AY.4 | 0.000496 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 3 | 323 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 1 | 323 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 226 | 226 | AY.103 | 0.001403 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 208 | 209 | AY.44 | 0.001266 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 1 | 209 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 184 | 188 | AY.43 | 0.000815 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 4 | 188 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 180 | 180 | P.1 | 0.002836 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 152 | 174 | B.1.177.86 | 0.027885 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 22 | 174 | B.1.177.86 | 0.004036 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 168 | 168 | AY.120.2.1 | 0.083707 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 158 | 158 | B.1.221 | 0.011223 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 142 | 144 | B.1.2 | 0.00125 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 2 | 144 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 104 | 141 | AY.25 | 0.000626 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 37 | 141 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 116 | 121 | B.1 | 0.001063 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 4 | 121 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 1 | 121 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 117 | 117 | AY.20 | 0.004547 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 92 | 93 | B.1.1 | 0.001669 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 93 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 84 | 90 | B.1.177 | 0.001106 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 6 | 90 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 89 | 89 | B.1.523 | 0.218137 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 86 | 86 | AY.54 | 0.0082 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 72 | 81 | B.1.429 | 0.001694 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 9 | 81 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 69 | 69 | AY.29 | 0.001088 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 67 | 67 | B.1.177.62 | 0.079857 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 62 | 62 | AY.75 | 0.003473 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 59 | 59 | B.1.160 | 0.00184 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 56 | 56 | AY.102 | 0.001485 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 53 | 53 | AY.3 | 0.000527 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 50 | 50 | AY.26 | 0.001416 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 49 | 49 | AY.117 | 0.004141 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 47 | 47 | B.1.526 | 0.001105 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 44 | 44 | AY.99 | 0.04617 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 43 | 43 | AY.71 | 0.020428 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 39 | 40 | AY.39 | 0.000964 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 40 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 40 | 40 | B.1.258.17 | 0.004159 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 31 | 38 | AY.4.2 | 0.000672 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 7 | 38 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 29 | 29 | B.1.258 | 0.00193 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 29 | 29 | B.1.525 | 0.003282 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 28 | 28 | AY.68 | 0.007665 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 25 | 25 | AY.99.2 | 0.002304 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 25 | 25 | B.1.1.355 | 0.384615 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 23 | 24 | AY.119 | 0.000812 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 24 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 22 | 22 | AY.46.6 | 0.001589 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 22 | 22 | B.1.1.317 | 0.009057 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 20 | 20 | AY.118 | 0.001253 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 19 | 19 | AY.6 | 0.000781 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 17 | 18 | AY.33 | 0.001135 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 18 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 17 | 17 | AY.23.1 | 0.007095 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 12 | 15 | B.1.1.519 | 0.000477 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 3 | 15 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 14 | 14 | AY.4.1 | 0.010324 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 14 | 14 | B.1.22 | 0.018445 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 14 | 14 | B.1.474 | 0.026616 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 13 | 13 | AY.106 | 0.004354 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 12 | 12 | B.1.531 | 1 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 11 | 11 | AY.32 | 0.005857 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 11 | 11 | B.1.1.416 | 0.009955 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 10 | 10 | AY.24 | 0.00431 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 9 | 9 | A.29 | 0.047872 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 9 | 9 | AY.101 | 0.004414 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 9 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 3 | 9 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 9 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 2 | 9 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 9 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 9 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 8 | AY.37 | 0.002528 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 8 | AY.7 | 0.001568 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 8 | AY.85 | 0.003417 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | B.1.1.298 | 0.006034 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | AY.90 | 0.003422 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 5 | 5 | B.1.619.1 | 0.003207 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | B.4 | 0.011038 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | C.18 | 0.012953 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 5 | 5 | W.4 | 0.006757 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 4 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 4 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.177.5 | 0.004969 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.177.74 | 0.060606 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.351.3 | 0.003506 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 3 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 3 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 3 | B | 0.000128 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.1.121 | 0.007282 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.1.351 | 0.00838 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.179 | 0.011278 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 3 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 3 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.408 | 0.01107 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 3 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 3 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 2 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 2 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctG | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | B.1.632 | 0.013423 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1857 | L1857L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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