CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctT | 6874 | 6603 | 0.960576 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctA | 6874 | 241 | 0.0350596 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctG | 6874 | 29 | 0.0042188 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | CtC | TtA | 6874 | 1 | 0.000145476 | 8090-8092 |
Details of the mutation L1791L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6603 | 6874 | All | 0.001263 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 241 | 6874 | All | 0.000046 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 29 | 6874 | All | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791L | CtC | TtA | 1 | 6874 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1286 | 1310 | B.1.1.7 | 0.001151 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 17 | 1310 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 7 | 1310 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 926 | 931 | AY.43 | 0.004103 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 5 | 931 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 294 | 307 | AY.4 | 0.000458 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 11 | 307 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 307 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 294 | 302 | B.1.617.2 | 0.001107 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 7 | 302 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 302 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 288 | 288 | B.1.427 | 0.014543 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 257 | 264 | AY.103 | 0.001596 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 7 | 264 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 262 | 262 | AH.3 | 0.996198 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 202 | 205 | AY.44 | 0.00123 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 205 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 199 | 200 | AY.3 | 0.001979 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 200 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 143 | 145 | B.1.2 | 0.001259 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 145 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 133 | 141 | B.1 | 0.001218 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 8 | 141 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 138 | 138 | AY.5 | 0.00285 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 136 | 136 | B.1.177.6 | 0.132812 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 120 | 120 | AY.4.5 | 0.012899 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 112 | 118 | P.1 | 0.001764 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 5 | 118 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 118 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 101 | 103 | AY.25 | 0.000607 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 103 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 71 | 76 | B.1.1.28 | 0.022098 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 76 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 72 | 72 | B.1.1.311 | 0.025788 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 66 | 66 | B.1.1 | 0.001197 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 66 | 66 | B.1.526 | 0.001551 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 62 | 63 | AY.100 | 0.002852 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 63 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 63 | 63 | AY.20 | 0.002449 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 55 | 63 | B.1.177 | 0.000724 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 8 | 63 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 60 | 62 | AY.39.1 | 0.002377 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 62 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 58 | 58 | B.1.177.21 | 0.004435 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 40 | 40 | B.1.36.8 | 0.04 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 39 | 39 | AY.9.2 | 0.001432 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 37 | 37 | B.1.258 | 0.002462 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 36 | 36 | B.1.595.3 | 0.947368 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 34 | 35 | AY.29 | 0.000536 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 35 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 33 | 33 | B.1.621 | 0.002921 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 31 | 31 | AY.35 | 0.007224 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 30 | 30 | B.1.177.55 | 0.06993 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 29 | 29 | R.1 | 0.00261 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 25 | 25 | AY.13 | 0.004024 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 22 | 24 | AY.39 | 0.000544 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 24 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 23 | AY.26 | 0.000566 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 2 | 23 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 23 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 22 | 22 | B.1.231 | 0.709677 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 20 | C.36 | 0.018215 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 16 | 18 | AY.102 | 0.000424 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 18 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 18 | 18 | B.1.258.17 | 0.001871 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 17 | 17 | Q.3 | 0.002466 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 16 | 16 | B.1.1.222 | 0.003264 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 14 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 4 | 14 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 12 | 12 | AY.64 | 0.007143 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 12 | 12 | B.1.1.432 | 0.01519 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 12 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 12 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | AY.59 | 0.005826 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.1.526 | 0.039007 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.346 | 0.014417 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 11 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 11 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.627 | 0.022222 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 10 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 10 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | P.3 | 0.015949 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | AY.40 | 0.008679 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 9 | B.1.1.434 | 0.002788 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 9 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.1.62 | 0.243243 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | AY.32 | 0.003727 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | B.1.1.230 | 0.06422 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | A.21 | 0.01662 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 6 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 6 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.229 | 0.034483 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.241 | 0.012422 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.371 | 0.0625 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 5 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 5 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.448 | 0.013123 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.574 | 0.010753 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.6.6 | 0.004444 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 5 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 5 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.1.243 | 0.016327 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 4 | B.1.1.322 | 0.026316 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 4 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.6.3 | 0.105263 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.258 | 0.009772 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.268 | 0.044776 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 3 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 3 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.256 | 0.027397 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | N.10 | 0.058824 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.240.1 | 0.025 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.256 | 0.017241 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.615 | 0.04 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 1791 | L1791L | CtC | TtA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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