CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1791 | L1791F | L2609F | nonsyn | Ctc | Ttc | 5041 | 5028 | 0.997421 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791F | L2609F | nonsyn | CtC | TtT | 5041 | 13 | 0.00257885 | 8090-8092 |
Details of the mutation L1791F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5028 | 5041 | All | 0.000962 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 13 | 5041 | All | 0.000002 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1004 | 1004 | B.1.1.7 | 0.000899 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 912 | 912 | AY.4 | 0.001419 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 327 | 327 | AY.99.1 | 0.507764 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 218 | 218 | B.1.617.2 | 0.000821 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 205 | 205 | B.1.258.17 | 0.021314 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 102 | 102 | AY.103 | 0.000633 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 97 | 97 | B.52 | 0.979798 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 95 | 95 | AY.43 | 0.000421 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 87 | 87 | B.1.351 | 0.002586 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 86 | 86 | AY.3 | 0.000855 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 84 | 84 | P.1 | 0.001323 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 78 | 78 | B.1.2 | 0.000687 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 74 | 74 | B.1.526 | 0.001739 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 69 | 69 | AY.25 | 0.000415 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 66 | 66 | B.1.177.74 | 1 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 63 | 63 | AY.44 | 0.000383 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 52 | 52 | AY.34 | 0.005042 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 48 | 48 | B.1.1.222 | 0.009792 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 42 | 42 | AY.100 | 0.001932 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 40 | 40 | XA | 0.888889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 39 | 39 | B.1.438.1 | 0.004183 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 36 | 36 | B.1.427 | 0.001818 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 31 | 31 | AY.102 | 0.000822 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 31 | 31 | AY.4.2 | 0.000672 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 30 | 30 | C.36.3.1 | 0.081522 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1.1.214 | 0.001553 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1.177.67 | 0.21374 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.1.216 | 0.021371 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 22 | 22 | B.1.177.60 | 0.004806 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 20 | 20 | P.1.14 | 0.000956 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 18 | 18 | AZ.2 | 0.014778 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 15 | 15 | AY.104 | 0.029762 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.311 | 0.005014 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.44 | 0.033735 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 13 | 13 | B | 0.001662 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 12 | 12 | B.1.177.6 | 0.011719 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.39.1.1 | 0.007246 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.620 | 0.005676 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AZ.3 | 0.006079 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.236 | 0.008214 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AL.1 | 0.025974 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.329 | 0.007692 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 1 | 2 | B.1.1.62 | 0.027027 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 2 | B.1.1.62 | 0.027027 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.213 | 0.029851 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.313 | 0.013158 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.36.9 | 0.006431 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.360 | 0.025316 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.296 | 0.018182 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.423 | 0.0625 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.479 | 0.038462 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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