CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1709L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31709L1709LL2527LsynCtgTtg349230130.8628297844-7846
ORF1ab/nsp31709L1709LL2527LsynctGctA34923450.09879737844-7846
ORF1ab/nsp31709L1709LL2527LsynctGctT34921340.03837347844-7846

Details of the mutation L1709L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31709L1709LCtgTtg30133492All0.000576
ORF1ab/nsp31709L1709LctGctA3453492All0.000066
ORF1ab/nsp31709L1709LctGctT1343492All0.000026
ORF1ab/nsp31709L1709LCtgTtg610610B.1.258.160.998363
ORF1ab/nsp31709L1709LCtgTtg362362B.1.2580.02409
ORF1ab/nsp31709L1709LCtgTtg275296B.1.617.20.001035
ORF1ab/nsp31709L1709LctGctT18296B.1.617.20.000068
ORF1ab/nsp31709L1709LctGctA3296B.1.617.20.000011
ORF1ab/nsp31709L1709LCtgTtg268286AY.1000.01233
ORF1ab/nsp31709L1709LctGctT18286AY.1000.000828
ORF1ab/nsp31709L1709LCtgTtg232278B.1.1.70.000208
ORF1ab/nsp31709L1709LctGctT36278B.1.1.70.000032
ORF1ab/nsp31709L1709LctGctA10278B.1.1.70.000009
ORF1ab/nsp31709L1709LctGctA251251B.1.1.3030.69337
ORF1ab/nsp31709L1709LCtgTtg242242B.1.1.3060.106094
ORF1ab/nsp31709L1709LCtgTtg194194AY.30.00193
ORF1ab/nsp31709L1709LCtgTtg126127AY.1030.000782
ORF1ab/nsp31709L1709LctGctA1127AY.1030.000006
ORF1ab/nsp31709L1709LCtgTtg106108B.1.20.000933
ORF1ab/nsp31709L1709LctGctT1108B.1.20.000009
ORF1ab/nsp31709L1709LctGctA1108B.1.20.000009
ORF1ab/nsp31709L1709LCtgTtg7272AY.430.000319
ORF1ab/nsp31709L1709LCtgTtg5971AY.40.000092
ORF1ab/nsp31709L1709LctGctA871AY.40.000012
ORF1ab/nsp31709L1709LctGctT471AY.40.000006
ORF1ab/nsp31709L1709LCtgTtg3948B.10.000357
ORF1ab/nsp31709L1709LctGctA648B.10.000055
ORF1ab/nsp31709L1709LctGctT348B.10.000027
ORF1ab/nsp31709L1709LCtgTtg3240AY.250.000192
ORF1ab/nsp31709L1709LctGctA540AY.250.00003
ORF1ab/nsp31709L1709LctGctT340AY.250.000018
ORF1ab/nsp31709L1709LCtgTtg3940B.1.2210.00277
ORF1ab/nsp31709L1709LctGctT140B.1.2210.000071
ORF1ab/nsp31709L1709LCtgTtg1736B.1.10.000308
ORF1ab/nsp31709L1709LctGctA1336B.1.10.000236
ORF1ab/nsp31709L1709LctGctT636B.1.10.000109
ORF1ab/nsp31709L1709LCtgTtg3232B.1.5380.258065
ORF1ab/nsp31709L1709LCtgTtg3131B.1.1.2840.003329
ORF1ab/nsp31709L1709LCtgTtg2424AY.360.003557
ORF1ab/nsp31709L1709LctGctA1719B.1.1770.000224
ORF1ab/nsp31709L1709LCtgTtg219B.1.1770.000026
ORF1ab/nsp31709L1709LCtgTtg1818AY.200.0007
ORF1ab/nsp31709L1709LCtgTtg1717B.1.2100.036247
ORF1ab/nsp31709L1709LctGctA816B.1.4290.000188
ORF1ab/nsp31709L1709LCtgTtg816B.1.4290.000188
ORF1ab/nsp31709L1709LCtgTtg1414B.1.177.810.002651
ORF1ab/nsp31709L1709LctGctT1011AY.1190.000353
ORF1ab/nsp31709L1709LCtgTtg111AY.1190.000035
ORF1ab/nsp31709L1709LCtgTtg810AY.540.000763
ORF1ab/nsp31709L1709LctGctT210AY.540.000191
ORF1ab/nsp31709L1709LCtgTtg79AY.1020.000186
ORF1ab/nsp31709L1709LctGctT19AY.1020.000027
ORF1ab/nsp31709L1709LctGctA19AY.1020.000027
ORF1ab/nsp31709L1709LctGctA99B.1.4970.002833
ORF1ab/nsp31709L1709LCtgTtg88AY.330.000534
ORF1ab/nsp31709L1709LCtgTtg78AY.440.000043
ORF1ab/nsp31709L1709LctGctA18AY.440.000006
ORF1ab/nsp31709L1709LCtgTtg68P.10.000095
ORF1ab/nsp31709L1709LctGctA28P.10.000032
ORF1ab/nsp31709L1709LctGctT470.222222
ORF1ab/nsp31709L1709LCtgTtg370.166667
ORF1ab/nsp31709L1709LCtgTtg77AY.1060.002344
ORF1ab/nsp31709L1709LCtgTtg46AY.39.10.000158
ORF1ab/nsp31709L1709LctGctA26AY.39.10.000079
ORF1ab/nsp31709L1709LCtgTtg66AY.50.000124
ORF1ab/nsp31709L1709LctGctT66B.1.4480.015748
ORF1ab/nsp31709L1709LCtgTtg55AY.1170.000423
ORF1ab/nsp31709L1709LCtgTtg35AY.46.60.000217
ORF1ab/nsp31709L1709LctGctT25AY.46.60.000144
ORF1ab/nsp31709L1709LCtgTtg55B.1.1600.000156
ORF1ab/nsp31709L1709LCtgTtg55P.1.140.000239
ORF1ab/nsp31709L1709LCtgTtg44B.1.1.1530.004381
ORF1ab/nsp31709L1709LCtgTtg44B.1.1.3170.001647
ORF1ab/nsp31709L1709LCtgTtg44B.1.360.000584
ORF1ab/nsp31709L1709LCtgTtg24B.1.617.10.000258
ORF1ab/nsp31709L1709LctGctT14B.1.617.10.000129
ORF1ab/nsp31709L1709LctGctA14B.1.617.10.000129
ORF1ab/nsp31709L1709LCtgTtg33AY.1010.001471
ORF1ab/nsp31709L1709LCtgTtg23AY.1130.000285
ORF1ab/nsp31709L1709LctGctT13AY.1130.000142
ORF1ab/nsp31709L1709LCtgTtg33AY.300.001187
ORF1ab/nsp31709L1709LCtgTtg33AY.4.20.000065
ORF1ab/nsp31709L1709LCtgTtg33AY.590.001589
ORF1ab/nsp31709L1709LCtgTtg33B.1.1.390.001529
ORF1ab/nsp31709L1709LCtgTtg23B.1.1.700.000682
ORF1ab/nsp31709L1709LctGctT13B.1.1.700.000341
ORF1ab/nsp31709L1709LctGctA33B.1.2980.006342
ORF1ab/nsp31709L1709LCtgTtg33B.1.5950.000783
ORF1ab/nsp31709L1709LCtgTtg33B.1.5960.000261
ORF1ab/nsp31709L1709LCtgTtg33B.1.6090.001438
ORF1ab/nsp31709L1709LCtgTtg22AD.20.000438
ORF1ab/nsp31709L1709LCtgTtg22AE.60.076923
ORF1ab/nsp31709L1709LCtgTtg22AY.1090.001479
ORF1ab/nsp31709L1709LCtgTtg22AY.260.000057
ORF1ab/nsp31709L1709LCtgTtg22AY.340.000194
ORF1ab/nsp31709L1709LCtgTtg22AY.450.000243
ORF1ab/nsp31709L1709LCtgTtg22AY.470.000062
ORF1ab/nsp31709L1709LCtgTtg22AY.500.001599
ORF1ab/nsp31709L1709LCtgTtg22AY.60.000082
ORF1ab/nsp31709L1709LCtgTtg22AY.7.20.001119
ORF1ab/nsp31709L1709LCtgTtg22AY.9.20.000073
ORF1ab/nsp31709L1709LCtgTtg22AY.920.000575
ORF1ab/nsp31709L1709LCtgTtg22AY.980.000158
ORF1ab/nsp31709L1709LCtgTtg12AY.98.10.000048
ORF1ab/nsp31709L1709LctGctT12AY.98.10.000048
ORF1ab/nsp31709L1709LCtgTtg22AY.99.20.000184
ORF1ab/nsp31709L1709LCtgTtg22B0.000256
ORF1ab/nsp31709L1709LCtgTtg22B.1.1.3980.006452
ORF1ab/nsp31709L1709LctGctT22B.1.258.170.000208
ORF1ab/nsp31709L1709LCtgTtg12B.1.2600.003344
ORF1ab/nsp31709L1709LctGctT12B.1.2600.003344
ORF1ab/nsp31709L1709LctGctT12B.1.3110.000275
ORF1ab/nsp31709L1709LctGctA12B.1.3110.000275
ORF1ab/nsp31709L1709LCtgTtg11A.10.000282
ORF1ab/nsp31709L1709LCtgTtg11A.23.10.000704
ORF1ab/nsp31709L1709LctGctT11A.50.001923
ORF1ab/nsp31709L1709LCtgTtg11AE.40.043478
ORF1ab/nsp31709L1709LCtgTtg11AY.1040.001984
ORF1ab/nsp31709L1709LCtgTtg11AY.1200.000037
ORF1ab/nsp31709L1709LCtgTtg11AY.140.000088
ORF1ab/nsp31709L1709LCtgTtg11AY.230.00007
ORF1ab/nsp31709L1709LCtgTtg11AY.240.000431
ORF1ab/nsp31709L1709LCtgTtg11AY.290.000016
ORF1ab/nsp31709L1709LCtgTtg11AY.320.000532
ORF1ab/nsp31709L1709LctGctT11AY.390.000025
ORF1ab/nsp31709L1709LCtgTtg11AY.39.1.10.000725
ORF1ab/nsp31709L1709LCtgTtg11AY.420.00004
ORF1ab/nsp31709L1709LCtgTtg11AY.5.30.000337
ORF1ab/nsp31709L1709LCtgTtg11AY.550.000917
ORF1ab/nsp31709L1709LCtgTtg11AY.630.000387
ORF1ab/nsp31709L1709LctGctT11AY.660.00107
ORF1ab/nsp31709L1709LCtgTtg11AY.670.000464
ORF1ab/nsp31709L1709LCtgTtg11AY.700.000209
ORF1ab/nsp31709L1709LCtgTtg11AY.810.001992
ORF1ab/nsp31709L1709LCtgTtg11AY.90.000068
ORF1ab/nsp31709L1709LctGctA11B.1.1.1170.009709
ORF1ab/nsp31709L1709LCtgTtg11B.1.1.2220.000204
ORF1ab/nsp31709L1709LCtgTtg11B.1.1.370.000193
ORF1ab/nsp31709L1709LCtgTtg11B.1.1.4340.000349
ORF1ab/nsp31709L1709LctGctT11B.1.1.5190.00004
ORF1ab/nsp31709L1709LctGctT11B.1.1570.002985
ORF1ab/nsp31709L1709LctGctT11B.1.160.300.002976
ORF1ab/nsp31709L1709LctGctT11B.1.177.150.000631
ORF1ab/nsp31709L1709LctGctT11B.1.177.230.003236
ORF1ab/nsp31709L1709LCtgTtg11B.1.177.600.000218
ORF1ab/nsp31709L1709LCtgTtg11B.1.177.750.001041
ORF1ab/nsp31709L1709LCtgTtg11B.1.2220.001692
ORF1ab/nsp31709L1709LCtgTtg11B.1.2430.00007
ORF1ab/nsp31709L1709LCtgTtg11B.1.258.110.000396
ORF1ab/nsp31709L1709LCtgTtg11B.1.258.140.00098
ORF1ab/nsp31709L1709LCtgTtg11B.1.2790.000514
ORF1ab/nsp31709L1709LctGctT11B.1.2840.013158
ORF1ab/nsp31709L1709LCtgTtg11B.1.3510.00003
ORF1ab/nsp31709L1709LCtgTtg11B.1.36.80.001
ORF1ab/nsp31709L1709LCtgTtg11B.1.4270.00005
ORF1ab/nsp31709L1709LctGctA11B.1.5090.000866
ORF1ab/nsp31709L1709LCtgTtg11B.1.5250.000113
ORF1ab/nsp31709L1709LCtgTtg11B.1.5680.001111
ORF1ab/nsp31709L1709LCtgTtg11B.1.5750.000303
ORF1ab/nsp31709L1709LCtgTtg11B.1.5970.00463
ORF1ab/nsp31709L1709LCtgTtg11B.1.6020.006536
ORF1ab/nsp31709L1709LCtgTtg11B.1.6120.002653
ORF1ab/nsp31709L1709LCtgTtg11B.1.6210.000089
ORF1ab/nsp31709L1709LctGctT11B.1.930.000934
ORF1ab/nsp31709L1709LCtgTtg11B.400.000364
ORF1ab/nsp31709L1709LCtgTtg11B.6.60.000889
ORF1ab/nsp31709L1709LCtgTtg11C.36.30.000567
ORF1ab/nsp31709L1709LctGctT11D.20.000075
ORF1ab/nsp31709L1709LCtgTtg11R.10.00009