CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1700L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31700L1700LL2518LsynctCctT127711610.9091627817-7819
ORF1ab/nsp31700L1700LL2518LsynctCctA12771110.08692257817-7819
ORF1ab/nsp31700L1700LL2518LsynctCctG127740.003132347817-7819
ORF1ab/nsp31700L1700LL2518LsynCtCTtA127710.0007830857817-7819

Details of the mutation L1700L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31700L1700LctCctT11611277All0.000222
ORF1ab/nsp31700L1700LctCctA1111277All0.000021
ORF1ab/nsp31700L1700LctCctG41277All0.000001
ORF1ab/nsp31700L1700LCtCTtA11277All0
ORF1ab/nsp31700L1700LctCctT341366B.1.1.70.000305
ORF1ab/nsp31700L1700LctCctA25366B.1.1.70.000022
ORF1ab/nsp31700L1700LctCctT5476AY.40.000084
ORF1ab/nsp31700L1700LctCctA2276AY.40.000034
ORF1ab/nsp31700L1700LctCctT7374AY.30.000726
ORF1ab/nsp31700L1700LctCctA174AY.30.00001
ORF1ab/nsp31700L1700LctCctT3844B.1.617.20.000143
ORF1ab/nsp31700L1700LctCctA644B.1.617.20.000023
ORF1ab/nsp31700L1700LctCctT4242P.10.000662
ORF1ab/nsp31700L1700LctCctT3132AY.430.000137
ORF1ab/nsp31700L1700LctCctA132AY.430.000004
ORF1ab/nsp31700L1700LctCctT3030N.100.882353
ORF1ab/nsp31700L1700LctCctT2929AY.470.000902
ORF1ab/nsp31700L1700LctCctT2929B.1.5260.000682
ORF1ab/nsp31700L1700LctCctT2727AY.250.000162
ORF1ab/nsp31700L1700LctCctT2327B.10.000211
ORF1ab/nsp31700L1700LctCctA427B.10.000037
ORF1ab/nsp31700L1700LctCctT2626AY.260.000736
ORF1ab/nsp31700L1700LctCctT2626B.1.1.500.017651
ORF1ab/nsp31700L1700LctCctT2626B.1.20.000229
ORF1ab/nsp31700L1700LctCctT2425AY.440.000146
ORF1ab/nsp31700L1700LctCctA125AY.440.000006
ORF1ab/nsp31700L1700LctCctT2121B.1.4270.00106
ORF1ab/nsp31700L1700LctCctT1919AY.570.012467
ORF1ab/nsp31700L1700LctCctT1018AY.1030.000062
ORF1ab/nsp31700L1700LctCctA818AY.1030.00005
ORF1ab/nsp31700L1700LctCctT1418B.1.1770.000184
ORF1ab/nsp31700L1700LctCctA418B.1.1770.000053
ORF1ab/nsp31700L1700LctCctT1818Q.10.002274
ORF1ab/nsp31700L1700LctCctT1313B.1.1.2840.001396
ORF1ab/nsp31700L1700LctCctT1313B.1.1.4130.089655
ORF1ab/nsp31700L1700LctCctT911B.1.1.330.003788
ORF1ab/nsp31700L1700LctCctA211B.1.1.330.000842
ORF1ab/nsp31700L1700LctCctT1111B.1.5380.08871
ORF1ab/nsp31700L1700LctCctT1010B.1.177.210.000765
ORF1ab/nsp31700L1700LctCctT99B.1.3690.002567
ORF1ab/nsp31700L1700LctCctT88AY.230.000558
ORF1ab/nsp31700L1700LctCctT88B.1.6270.016162
ORF1ab/nsp31700L1700LctCctT77AY.9.20.000257
ORF1ab/nsp31700L1700LctCctT67B.1.3510.000178
ORF1ab/nsp31700L1700LctCctA17B.1.3510.00003
ORF1ab/nsp31700L1700LctCctT56AY.1020.000133
ORF1ab/nsp31700L1700LctCctA16AY.1020.000027
ORF1ab/nsp31700L1700LctCctA66AY.770.006764
ORF1ab/nsp31700L1700LctCctT66B.1.1.5190.000238
ORF1ab/nsp31700L1700LctCctT55AY.140.00044
ORF1ab/nsp31700L1700LctCctA55B.1.1.2140.000277
ORF1ab/nsp31700L1700LctCctT35B.1.2580.0002
ORF1ab/nsp31700L1700LctCctG25B.1.2580.000133
ORF1ab/nsp31700L1700LctCctT55W.10.043478
ORF1ab/nsp31700L1700LctCctT44AY.390.000099
ORF1ab/nsp31700L1700LctCctT44AY.46.40.000658
ORF1ab/nsp31700L1700LctCctA34AY.610.000314
ORF1ab/nsp31700L1700LctCctT14AY.610.000105
ORF1ab/nsp31700L1700LctCctT44AY.99.20.000369
ORF1ab/nsp31700L1700LctCctT44B.1.1790.015038
ORF1ab/nsp31700L1700LctCctT44B.1.2650.005083
ORF1ab/nsp31700L1700LctCctT44B.1.5950.001044
ORF1ab/nsp31700L1700LctCctT44B.1.6210.000354
ORF1ab/nsp31700L1700LctCctT44B.1.6280.001409
ORF1ab/nsp31700L1700LctCctT44P.1.160.001496
ORF1ab/nsp31700L1700LctCctT33AY.1000.000138
ORF1ab/nsp31700L1700LctCctT33AY.200.000117
ORF1ab/nsp31700L1700LctCctA23AY.460.000208
ORF1ab/nsp31700L1700LctCctT13AY.460.000104
ORF1ab/nsp31700L1700LctCctT33AY.790.003632
ORF1ab/nsp31700L1700LctCctT33B.1.1.1130.020979
ORF1ab/nsp31700L1700LctCctT33B.1.1.3060.001315
ORF1ab/nsp31700L1700LctCctT33B.1.177.520.005272
ORF1ab/nsp31700L1700LctCctT33B.1.2430.000209
ORF1ab/nsp31700L1700LctCctT33B.1.4820.25
ORF1ab/nsp31700L1700LctCctT33P.20.00056
ORF1ab/nsp31700L1700LctCctA33Q.40.001364
ORF1ab/nsp31700L1700LctCctA120.055556
ORF1ab/nsp31700L1700LCtCTtA120.055556
ORF1ab/nsp31700L1700LctCctT22AY.160.000759
ORF1ab/nsp31700L1700LctCctG12AY.3.10.000085
ORF1ab/nsp31700L1700LctCctT12AY.3.10.000085
ORF1ab/nsp31700L1700LctCctT22AY.4.20.000043
ORF1ab/nsp31700L1700LctCctT12AY.50.000021
ORF1ab/nsp31700L1700LctCctA12AY.50.000021
ORF1ab/nsp31700L1700LctCctT22AY.590.001059
ORF1ab/nsp31700L1700LctCctT22AY.980.000158
ORF1ab/nsp31700L1700LctCctT22B.1.10.000036
ORF1ab/nsp31700L1700LctCctA12B.1.1.2220.000204
ORF1ab/nsp31700L1700LctCctT12B.1.1.2220.000204
ORF1ab/nsp31700L1700LctCctT22B.1.1.280.000622
ORF1ab/nsp31700L1700LctCctT22B.1.1.3110.000716
ORF1ab/nsp31700L1700LctCctA22B.1.177.870.001456
ORF1ab/nsp31700L1700LctCctT22B.1.2210.000142
ORF1ab/nsp31700L1700LctCctA22B.1.351.20.000605
ORF1ab/nsp31700L1700LctCctA22B.1.4000.000858
ORF1ab/nsp31700L1700LctCctT22B.1.4290.000047
ORF1ab/nsp31700L1700LctCctT22B.1.5750.000607
ORF1ab/nsp31700L1700LctCctT22C.160.002121
ORF1ab/nsp31700L1700LctCctT22C.260.014706
ORF1ab/nsp31700L1700LctCctT22C.370.000232
ORF1ab/nsp31700L1700LctCctT22Q.80.00033
ORF1ab/nsp31700L1700LctCctA11AY.1040.001984
ORF1ab/nsp31700L1700LctCctT11AY.1130.000142
ORF1ab/nsp31700L1700LctCctG11AY.116.10.000311
ORF1ab/nsp31700L1700LctCctT11AY.1170.000085
ORF1ab/nsp31700L1700LctCctT11AY.1190.000035
ORF1ab/nsp31700L1700LctCctT11AY.130.000161
ORF1ab/nsp31700L1700LctCctT11AY.20.000356
ORF1ab/nsp31700L1700LctCctT11AY.270.000065
ORF1ab/nsp31700L1700LctCctT11AY.290.000016
ORF1ab/nsp31700L1700LctCctT11AY.330.000067
ORF1ab/nsp31700L1700LctCctA11AY.380.000499
ORF1ab/nsp31700L1700LctCctT11AY.39.10.00004
ORF1ab/nsp31700L1700LctCctT11AY.4.50.000107
ORF1ab/nsp31700L1700LctCctT11AY.450.000122
ORF1ab/nsp31700L1700LctCctT11AY.500.000799
ORF1ab/nsp31700L1700LctCctA11AY.520.000814
ORF1ab/nsp31700L1700LctCctT11AY.550.000917
ORF1ab/nsp31700L1700LctCctT11AY.690.000187
ORF1ab/nsp31700L1700LctCctT11AY.7.10.000113
ORF1ab/nsp31700L1700LctCctA11AY.7.20.000559
ORF1ab/nsp31700L1700LctCctT11AY.740.000116
ORF1ab/nsp31700L1700LctCctT11AY.90.000068
ORF1ab/nsp31700L1700LctCctT11AY.9.10.000084
ORF1ab/nsp31700L1700LctCctT11AY.920.000287
ORF1ab/nsp31700L1700LctCctT11B.1.1.2070.001182
ORF1ab/nsp31700L1700LctCctT11B.1.1.250.000569
ORF1ab/nsp31700L1700LctCctT11B.1.1.3180.000302
ORF1ab/nsp31700L1700LctCctT11B.1.1.3220.008772
ORF1ab/nsp31700L1700LctCctT11B.1.1.3730.02381
ORF1ab/nsp31700L1700LctCctT11B.1.1.4340.000349
ORF1ab/nsp31700L1700LctCctT11B.1.1.4400.011765
ORF1ab/nsp31700L1700LctCctA11B.1.1570.002985
ORF1ab/nsp31700L1700LctCctT11B.1.1600.000031
ORF1ab/nsp31700L1700LctCctT11B.1.177.440.000519
ORF1ab/nsp31700L1700LctCctA11B.1.177.730.000566
ORF1ab/nsp31700L1700LctCctT11B.1.177.810.000189
ORF1ab/nsp31700L1700LctCctT11B.1.2400.000216
ORF1ab/nsp31700L1700LctCctT11B.1.36.180.00042
ORF1ab/nsp31700L1700LctCctT11B.1.36.80.001
ORF1ab/nsp31700L1700LctCctT11B.1.36.90.003215
ORF1ab/nsp31700L1700LctCctT11B.1.3890.001002
ORF1ab/nsp31700L1700LctCctT11B.1.438.10.000107
ORF1ab/nsp31700L1700LctCctT11B.1.466.20.000391
ORF1ab/nsp31700L1700LctCctT11B.1.5610.000397
ORF1ab/nsp31700L1700LctCctT11B.1.5960.000087
ORF1ab/nsp31700L1700LctCctT11B.1.6090.000479
ORF1ab/nsp31700L1700LctCctT11B.1.617.10.000129
ORF1ab/nsp31700L1700LctCctT11B.1.6230.000536
ORF1ab/nsp31700L1700LctCctA11B.6.60.000889
ORF1ab/nsp31700L1700LctCctT11C.320.023256
ORF1ab/nsp31700L1700LctCctT11C.37.10.002618
ORF1ab/nsp31700L1700LctCctT11P.1.10.000318
ORF1ab/nsp31700L1700LctCctT11P.1.20.001156
ORF1ab/nsp31700L1700LctCctT11P.1.70.000319