CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1700 | L1700F | L2518F | nonsyn | Ctc | Ttc | 814 | 813 | 0.998771 | 7817-7819 |
ORF1ab/nsp3 | 1700 | L1700F | L2518F | nonsyn | CtC | TtT | 814 | 1 | 0.0012285 | 7817-7819 |
Details of the mutation L1700F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 813 | 814 | All | 0.000155 |
ORF1ab/nsp3 | 1700 | L1700F | CtC | TtT | 1 | 814 | All | 0 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 196 | 197 | B.1.1.7 | 0.000175 |
ORF1ab/nsp3 | 1700 | L1700F | CtC | TtT | 1 | 197 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 119 | 119 | AY.33 | 0.007947 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 76 | 76 | AY.43 | 0.000337 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 9 | 9 | B.1.177.4 | 0.0019 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 8 | 8 | B.1.177.87 | 0.005822 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.1.635 | 0.052632 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.1.164 | 0.010309 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1700 | L1700F | Ctc | Ttc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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