CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1546L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31546L1546LL2364LsynctTctC2332000.8583697355-7357
ORF1ab/nsp31546L1546LL2364LsynctTctG233280.1201727355-7357
ORF1ab/nsp31546L1546LL2364LsynctTctA23350.02145927355-7357

Details of the mutation L1546L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31546L1546LctTctC200233All0.000038
ORF1ab/nsp31546L1546LctTctG28233All0.000005
ORF1ab/nsp31546L1546LctTctA5233All0.000001
ORF1ab/nsp31546L1546LctTctC5656B.1.1.1231
ORF1ab/nsp31546L1546LctTctC2727AY.440.000164
ORF1ab/nsp31546L1546LctTctG2626B.1.5610.010322
ORF1ab/nsp31546L1546LctTctC1212B.1.617.20.000045
ORF1ab/nsp31546L1546LctTctC1111B.1.1.70.00001
ORF1ab/nsp31546L1546LctTctC1010B.1.1.630.003858
ORF1ab/nsp31546L1546LctTctC88AY.30.00008
ORF1ab/nsp31546L1546LctTctC88AY.430.000035
ORF1ab/nsp31546L1546LctTctC77AY.1020.000186
ORF1ab/nsp31546L1546LctTctC77AY.40.000011
ORF1ab/nsp31546L1546LctTctC77B.1.20.000062
ORF1ab/nsp31546L1546LctTctC66P.10.000095
ORF1ab/nsp31546L1546LctTctC44B.1.1.2720.020833
ORF1ab/nsp31546L1546LctTctC33AY.240.001293
ORF1ab/nsp31546L1546LctTctC33AY.46.60.000217
ORF1ab/nsp31546L1546LctTctA220.111111
ORF1ab/nsp31546L1546LctTctA22AY.200.000078
ORF1ab/nsp31546L1546LctTctC22AY.420.00008
ORF1ab/nsp31546L1546LctTctC22AY.450.000243
ORF1ab/nsp31546L1546LctTctC22B.10.000018
ORF1ab/nsp31546L1546LctTctC12B.1.10.000018
ORF1ab/nsp31546L1546LctTctA12B.1.10.000018
ORF1ab/nsp31546L1546LctTctC22B.1.1770.000026
ORF1ab/nsp31546L1546LctTctC22B.1.177.210.000153
ORF1ab/nsp31546L1546LctTctC22B.1.617.10.000258
ORF1ab/nsp31546L1546LctTctC11AY.1030.000006
ORF1ab/nsp31546L1546LctTctC11AY.160.00038
ORF1ab/nsp31546L1546LctTctC11AY.290.000016
ORF1ab/nsp31546L1546LctTctC11AY.340.000097
ORF1ab/nsp31546L1546LctTctC11AY.360.000148
ORF1ab/nsp31546L1546LctTctC11AY.390.000025
ORF1ab/nsp31546L1546LctTctC11AY.50.000021
ORF1ab/nsp31546L1546LctTctG11AY.9.20.000037
ORF1ab/nsp31546L1546LctTctC11B.1.1.10.000327
ORF1ab/nsp31546L1546LctTctG11B.1.1.2220.000204
ORF1ab/nsp31546L1546LctTctC11B.1.1.3160.000925
ORF1ab/nsp31546L1546LctTctC11B.1.1600.000031
ORF1ab/nsp31546L1546LctTctC11B.1.3510.00003
ORF1ab/nsp31546L1546LctTctC11B.1.36.80.001
ORF1ab/nsp31546L1546LctTctC11B.1.4290.000024
ORF1ab/nsp31546L1546LctTctC11B.1.5950.000261
ORF1ab/nsp31546L1546LctTctC11B.1.6210.000089
ORF1ab/nsp31546L1546LctTctC11C.180.002591
ORF1ab/nsp31546L1546LctTctC11C.36.3.10.002717
ORF1ab/nsp31546L1546LctTctC11P.1.140.000048