CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1525L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31525L1525LL2343LsynTtgCtg278522740.8165177292-7294
ORF1ab/nsp31525L1525LL2343LsynttGttA27855090.1827657292-7294
ORF1ab/nsp31525L1525LL2343LsynTtGCtT278510.0003590667292-7294
ORF1ab/nsp31525L1525LL2343LsynTtGCtA278510.0003590667292-7294

Details of the mutation L1525L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31525L1525LTtgCtg22742785All0.000435
ORF1ab/nsp31525L1525LttGttA5092785All0.000097
ORF1ab/nsp31525L1525LTtGCtA12785All0
ORF1ab/nsp31525L1525LTtGCtT12785All0
ORF1ab/nsp31525L1525LTtgCtg16981711AY.260.048071
ORF1ab/nsp31525L1525LttGttA131711AY.260.000368
ORF1ab/nsp31525L1525LTtgCtg226252B.1.1.70.000202
ORF1ab/nsp31525L1525LttGttA26252B.1.1.70.000023
ORF1ab/nsp31525L1525LTtgCtg166166B.1.36.280.954023
ORF1ab/nsp31525L1525LttGttA106113AY.40.000165
ORF1ab/nsp31525L1525LTtgCtg7113AY.40.000011
ORF1ab/nsp31525L1525LttGttA9898AY.250.000589
ORF1ab/nsp31525L1525LTtgCtg3446AY.30.000338
ORF1ab/nsp31525L1525LttGttA1246AY.30.000119
ORF1ab/nsp31525L1525LttGttA2737B.1.617.20.000102
ORF1ab/nsp31525L1525LTtgCtg1037B.1.617.20.000038
ORF1ab/nsp31525L1525LTtgCtg2832B.10.000256
ORF1ab/nsp31525L1525LttGttA332B.10.000027
ORF1ab/nsp31525L1525LTtGCtT132B.10.000009
ORF1ab/nsp31525L1525LttGttA2731B.1.4290.000635
ORF1ab/nsp31525L1525LTtgCtg431B.1.4290.000094
ORF1ab/nsp31525L1525LTtgCtg2929B.1.4970.009128
ORF1ab/nsp31525L1525LttGttA2324B.1.3510.000684
ORF1ab/nsp31525L1525LTtgCtg124B.1.3510.00003
ORF1ab/nsp31525L1525LttGttA1923B.1.1770.00025
ORF1ab/nsp31525L1525LTtgCtg423B.1.1770.000053
ORF1ab/nsp31525L1525LttGttA1215P.10.000189
ORF1ab/nsp31525L1525LTtgCtg315P.10.000047
ORF1ab/nsp31525L1525LttGttA1214AY.440.000073
ORF1ab/nsp31525L1525LTtgCtg214AY.440.000012
ORF1ab/nsp31525L1525LttGttA1214B.1.20.000106
ORF1ab/nsp31525L1525LTtgCtg214B.1.20.000018
ORF1ab/nsp31525L1525LttGttA1011B.1.258.170.00104
ORF1ab/nsp31525L1525LTtgCtg111B.1.258.170.000104
ORF1ab/nsp31525L1525LttGttA910AY.430.00004
ORF1ab/nsp31525L1525LTtgCtg110AY.430.000004
ORF1ab/nsp31525L1525LttGttA1010AY.98.10.000484
ORF1ab/nsp31525L1525LTtgCtg58B.1.360.00073
ORF1ab/nsp31525L1525LttGttA38B.1.360.000438
ORF1ab/nsp31525L1525LttGttA46B.1.5260.000094
ORF1ab/nsp31525L1525LTtgCtg26B.1.5260.000047
ORF1ab/nsp31525L1525LTtgCtg35AY.1030.000019
ORF1ab/nsp31525L1525LttGttA25AY.1030.000012
ORF1ab/nsp31525L1525LttGttA55B.1.1.500.003394
ORF1ab/nsp31525L1525LttGttA45B.1.1600.000125
ORF1ab/nsp31525L1525LTtgCtg15B.1.1600.000031
ORF1ab/nsp31525L1525LTtgCtg55B.1.517.10.026316
ORF1ab/nsp31525L1525LttGttA44AY.1190.000141
ORF1ab/nsp31525L1525LttGttA44AY.470.000124
ORF1ab/nsp31525L1525LttGttA44B.1.36.290.002069
ORF1ab/nsp31525L1525LttGttA44P.1.20.004624
ORF1ab/nsp31525L1525LttGttA33AY.1020.00008
ORF1ab/nsp31525L1525LTtgCtg23AY.330.000134
ORF1ab/nsp31525L1525LttGttA13AY.330.000067
ORF1ab/nsp31525L1525LTtgCtg33AY.610.000314
ORF1ab/nsp31525L1525LTtgCtg33B.1.1.2140.000166
ORF1ab/nsp31525L1525LttGttA13B.1.1.3260.001761
ORF1ab/nsp31525L1525LTtgCtg13B.1.1.3260.001761
ORF1ab/nsp31525L1525LTtGCtA13B.1.1.3260.001761
ORF1ab/nsp31525L1525LttGttA23B.1.2340.000264
ORF1ab/nsp31525L1525LTtgCtg13B.1.2340.000132
ORF1ab/nsp31525L1525LttGttA33B.1.240.20.090909
ORF1ab/nsp31525L1525LttGttA33B.1.4270.000151
ORF1ab/nsp31525L1525LttGttA12AY.1180.000063
ORF1ab/nsp31525L1525LTtgCtg12AY.1180.000063
ORF1ab/nsp31525L1525LttGttA12AY.200.000039
ORF1ab/nsp31525L1525LTtgCtg12AY.200.000039
ORF1ab/nsp31525L1525LTtgCtg12AY.230.00007
ORF1ab/nsp31525L1525LttGttA12AY.230.00007
ORF1ab/nsp31525L1525LttGttA12AY.390.000025
ORF1ab/nsp31525L1525LTtgCtg12AY.390.000025
ORF1ab/nsp31525L1525LTtgCtg22AY.4.20.000043
ORF1ab/nsp31525L1525LTtgCtg12AY.50.000021
ORF1ab/nsp31525L1525LttGttA12AY.50.000021
ORF1ab/nsp31525L1525LttGttA22AY.980.000158
ORF1ab/nsp31525L1525LttGttA22B.1.1.5190.000079
ORF1ab/nsp31525L1525LttGttA22B.1.177.150.001262
ORF1ab/nsp31525L1525LttGttA22B.1.177.70.00033
ORF1ab/nsp31525L1525LTtgCtg22B.1.2430.000139
ORF1ab/nsp31525L1525LttGttA12C.370.000116
ORF1ab/nsp31525L1525LTtgCtg12C.370.000116
ORF1ab/nsp31525L1525LttGttA22P.1.140.000096
ORF1ab/nsp31525L1525LTtgCtg22P.1.170.000324
ORF1ab/nsp31525L1525LTtgCtg22Q.60.013245
ORF1ab/nsp31525L1525LTtgCtg11A.210.00277
ORF1ab/nsp31525L1525LTtgCtg11AF.10.037037
ORF1ab/nsp31525L1525LttGttA11AY.1090.00074
ORF1ab/nsp31525L1525LTtgCtg11AY.1130.000142
ORF1ab/nsp31525L1525LttGttA11AY.1170.000085
ORF1ab/nsp31525L1525LttGttA11AY.1200.000037
ORF1ab/nsp31525L1525LttGttA11AY.120.20.001285
ORF1ab/nsp31525L1525LttGttA11AY.23.10.000417
ORF1ab/nsp31525L1525LttGttA11AY.290.000016
ORF1ab/nsp31525L1525LttGttA11AY.34.10.00051
ORF1ab/nsp31525L1525LttGttA11AY.39.10.00004
ORF1ab/nsp31525L1525LTtgCtg11AY.4.50.000107
ORF1ab/nsp31525L1525LttGttA11AY.450.000122
ORF1ab/nsp31525L1525LttGttA11AY.460.000104
ORF1ab/nsp31525L1525LttGttA11AY.46.40.000165
ORF1ab/nsp31525L1525LttGttA11AY.46.60.000072
ORF1ab/nsp31525L1525LttGttA11AY.5.40.000277
ORF1ab/nsp31525L1525LttGttA11AY.530.000288
ORF1ab/nsp31525L1525LTtgCtg11AY.540.000095
ORF1ab/nsp31525L1525LTtgCtg11AY.620.000436
ORF1ab/nsp31525L1525LttGttA11AY.690.000187
ORF1ab/nsp31525L1525LttGttA11AY.9.10.000084
ORF1ab/nsp31525L1525LTtgCtg11AY.99.20.000092
ORF1ab/nsp31525L1525LttGttA11B.1.10.000018
ORF1ab/nsp31525L1525LttGttA11B.1.1.1890.001513
ORF1ab/nsp31525L1525LTtgCtg11B.1.1.2840.000107
ORF1ab/nsp31525L1525LTtgCtg11B.1.1.5070.008696
ORF1ab/nsp31525L1525LttGttA11B.1.1.5260.003546
ORF1ab/nsp31525L1525LttGttA11B.1.1.80.003584
ORF1ab/nsp31525L1525LTtgCtg11B.1.1260.001276
ORF1ab/nsp31525L1525LTtgCtg11B.1.177.210.000076
ORF1ab/nsp31525L1525LttGttA11B.1.177.730.000566
ORF1ab/nsp31525L1525LttGttA11B.1.1890.004292
ORF1ab/nsp31525L1525LttGttA11B.1.258.120.007874
ORF1ab/nsp31525L1525LTtgCtg11B.1.2600.003344
ORF1ab/nsp31525L1525LTtgCtg11B.1.3290.000608
ORF1ab/nsp31525L1525LttGttA11B.1.5600.00463
ORF1ab/nsp31525L1525LTtgCtg11B.1.5960.000087
ORF1ab/nsp31525L1525LTtgCtg11B.1.6180.004032
ORF1ab/nsp31525L1525LttGttA11B.30.000831
ORF1ab/nsp31525L1525LTtgCtg11B.300.014706
ORF1ab/nsp31525L1525LttGttA11C.160.00106
ORF1ab/nsp31525L1525LttGttA11P.1.150.000232
ORF1ab/nsp31525L1525LTtgCtg11Q.10.000126
ORF1ab/nsp31525L1525LTtgCtg11Q.80.000165