CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L151F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3151L151FL969FnonsynCttTtt40140113170-3172

Details of the mutation L151F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3151L151FCttTtt401401All0.000077
ORF1ab/nsp3151L151FCttTtt7878B.1.6210.006904
ORF1ab/nsp3151L151FCttTtt3939B.1.1.70.000035
ORF1ab/nsp3151L151FCttTtt3232AY.690.005973
ORF1ab/nsp3151L151FCttTtt2424B.1.617.20.00009
ORF1ab/nsp3151L151FCttTtt2020B.1.1.1450.740741
ORF1ab/nsp3151L151FCttTtt2020B.1.360.002918
ORF1ab/nsp3151L151FCttTtt1818AY.30.000179
ORF1ab/nsp3151L151FCttTtt1616AY.40.000025
ORF1ab/nsp3151L151FCttTtt1212AY.440.000073
ORF1ab/nsp3151L151FCttTtt1111B.1.258.140.010784
ORF1ab/nsp3151L151FCttTtt66AY.1130.000854
ORF1ab/nsp3151L151FCttTtt66AY.46.60.000433
ORF1ab/nsp3151L151FCttTtt66AY.540.000572
ORF1ab/nsp3151L151FCttTtt55AY.1020.000133
ORF1ab/nsp3151L151FCttTtt55B.10.000046
ORF1ab/nsp3151L151FCttTtt55B.1.1770.000066
ORF1ab/nsp3151L151FCttTtt44AY.1030.000025
ORF1ab/nsp3151L151FCttTtt44AY.1170.000338
ORF1ab/nsp3151L151FCttTtt44AY.430.000018
ORF1ab/nsp3151L151FCttTtt33AY.340.000291
ORF1ab/nsp3151L151FCttTtt33AY.470.000093
ORF1ab/nsp3151L151FCttTtt33B.1.20.000026
ORF1ab/nsp3151L151FCttTtt22AY.100.00106
ORF1ab/nsp3151L151FCttTtt22AY.116.10.000623
ORF1ab/nsp3151L151FCttTtt22AY.250.000012
ORF1ab/nsp3151L151FCttTtt22AY.270.000129
ORF1ab/nsp3151L151FCttTtt22AY.370.000632
ORF1ab/nsp3151L151FCttTtt22AY.390.000049
ORF1ab/nsp3151L151FCttTtt22AY.610.00021
ORF1ab/nsp3151L151FCttTtt22AY.620.000871
ORF1ab/nsp3151L151FCttTtt22AY.850.000854
ORF1ab/nsp3151L151FCttTtt22B.1.10.000036
ORF1ab/nsp3151L151FCttTtt22B.1.2430.000139
ORF1ab/nsp3151L151FCttTtt22B.1.2580.000133
ORF1ab/nsp3151L151FCttTtt22B.1.5260.000047
ORF1ab/nsp3151L151FCttTtt22B.1.5960.000174
ORF1ab/nsp3151L151FCttTtt22B.1.6250.004706
ORF1ab/nsp3151L151FCttTtt22C.260.014706
ORF1ab/nsp3151L151FCttTtt110.055556
ORF1ab/nsp3151L151FCttTtt11A.2.20.001689
ORF1ab/nsp3151L151FCttTtt11AY.1070.000466
ORF1ab/nsp3151L151FCttTtt11AY.1080.001103
ORF1ab/nsp3151L151FCttTtt11AY.1110.000183
ORF1ab/nsp3151L151FCttTtt11AY.1160.000287
ORF1ab/nsp3151L151FCttTtt11AY.260.000028
ORF1ab/nsp3151L151FCttTtt11AY.290.000016
ORF1ab/nsp3151L151FCttTtt11AY.3.10.000085
ORF1ab/nsp3151L151FCttTtt11AY.300.000396
ORF1ab/nsp3151L151FCttTtt11AY.330.000067
ORF1ab/nsp3151L151FCttTtt11AY.34.10.00051
ORF1ab/nsp3151L151FCttTtt11AY.350.000233
ORF1ab/nsp3151L151FCttTtt11AY.39.10.00004
ORF1ab/nsp3151L151FCttTtt11AY.450.000122
ORF1ab/nsp3151L151FCttTtt11AY.50.000021
ORF1ab/nsp3151L151FCttTtt11AY.700.000209
ORF1ab/nsp3151L151FCttTtt11AY.730.000665
ORF1ab/nsp3151L151FCttTtt11AY.750.000056
ORF1ab/nsp3151L151FCttTtt11AY.75.10.00018
ORF1ab/nsp3151L151FCttTtt11AY.90.000068
ORF1ab/nsp3151L151FCttTtt11B.1.1.2220.000204
ORF1ab/nsp3151L151FCttTtt11B.1.1.2340.012048
ORF1ab/nsp3151L151FCttTtt11B.1.1.390.00051
ORF1ab/nsp3151L151FCttTtt11B.1.1.3910.008547
ORF1ab/nsp3151L151FCttTtt11B.1.1.4340.000349
ORF1ab/nsp3151L151FCttTtt11B.1.1.470.005348
ORF1ab/nsp3151L151FCttTtt11B.1.110.30.000718
ORF1ab/nsp3151L151FCttTtt11B.1.177.120.000152
ORF1ab/nsp3151L151FCttTtt11B.1.177.650.000665
ORF1ab/nsp3151L151FCttTtt11B.1.177.860.000183
ORF1ab/nsp3151L151FCttTtt11B.1.3110.000275
ORF1ab/nsp3151L151FCttTtt11B.1.3510.00003
ORF1ab/nsp3151L151FCttTtt11B.1.36.220.001208
ORF1ab/nsp3151L151FCttTtt11B.1.36.360.000602
ORF1ab/nsp3151L151FCttTtt11B.1.36.80.001
ORF1ab/nsp3151L151FCttTtt11B.1.36.90.003215
ORF1ab/nsp3151L151FCttTtt11B.1.4560.003268
ORF1ab/nsp3151L151FCttTtt11B.1.4620.007246
ORF1ab/nsp3151L151FCttTtt11B.1.5300.007143
ORF1ab/nsp3151L151FCttTtt11B.1.617.10.000129
ORF1ab/nsp3151L151FCttTtt11C.370.000116
ORF1ab/nsp3151L151FCttTtt11D.20.000075
ORF1ab/nsp3151L151FCttTtt11P.10.000016
ORF1ab/nsp3151L151FCttTtt11P.50.013699

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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