CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1511 | L1511F | L2329F | nonsyn | ttG | ttT | 1049 | 1037 | 0.988561 | 7250-7252 |
ORF1ab/nsp3 | 1511 | L1511F | L2329F | nonsyn | ttG | ttC | 1049 | 12 | 0.0114395 | 7250-7252 |
Details of the mutation L1511F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1037 | 1049 | All | 0.000198 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 12 | 1049 | All | 0.000002 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 673 | 676 | AY.4 | 0.001047 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 3 | 676 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 38 | 39 | AY.43 | 0.000168 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 1 | 39 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 23 | 23 | AY.25 | 0.000138 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 20 | 22 | AY.102 | 0.00053 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 2 | 22 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 19 | 19 | AY.6 | 0.000781 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 17 | 19 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 2 | 19 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 18 | 18 | AY.75 | 0.001008 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 5 | 6 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 1 | 6 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 3 | 4 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 1 | 4 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1511 | L1511F | ttG | ttT | 1 | 1 | R.2 | 0.014493 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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