CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1417P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31417L1417PL2235PnonsyncTacCa1041020.9807696968-6970
ORF1ab/nsp31417L1417PL2235PnonsyncTAcCG10410.009615386968-6970
ORF1ab/nsp31417L1417PL2235PnonsyncTAcCT10410.009615386968-6970

Details of the mutation L1417P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31417L1417PcTacCa102104All0.00002
ORF1ab/nsp31417L1417PcTAcCT1104All0
ORF1ab/nsp31417L1417PcTAcCG1104All0
ORF1ab/nsp31417L1417PcTacCa4444B.1.10.000798
ORF1ab/nsp31417L1417PcTacCa1111N.40.046809
ORF1ab/nsp31417L1417PcTacCa77AY.40.000011
ORF1ab/nsp31417L1417PcTacCa55AY.440.00003
ORF1ab/nsp31417L1417PcTacCa44AY.1030.000025
ORF1ab/nsp31417L1417PcTacCa33AY.250.000018
ORF1ab/nsp31417L1417PcTacCa33AY.4.50.000322
ORF1ab/nsp31417L1417PcTacCa33B.1.617.20.000011
ORF1ab/nsp31417L1417PcTacCa120.055556
ORF1ab/nsp31417L1417PcTAcCG120.055556
ORF1ab/nsp31417L1417PcTacCa22AY.1210.000271
ORF1ab/nsp31417L1417PcTacCa22AY.430.000009
ORF1ab/nsp31417L1417PcTacCa22B.1.1.70.000002
ORF1ab/nsp31417L1417PcTAcCT12B.1.2210.000071
ORF1ab/nsp31417L1417PcTacCa12B.1.2210.000071
ORF1ab/nsp31417L1417PcTacCa22B.1.4350.022727
ORF1ab/nsp31417L1417PcTacCa22B.1.5260.000047
ORF1ab/nsp31417L1417PcTacCa11AY.330.000067
ORF1ab/nsp31417L1417PcTacCa11AY.470.000031
ORF1ab/nsp31417L1417PcTacCa11B.10.000009
ORF1ab/nsp31417L1417PcTacCa11B.1.1.2140.000055
ORF1ab/nsp31417L1417PcTacCa11B.1.1.580.005376
ORF1ab/nsp31417L1417PcTacCa11B.1.2580.000067
ORF1ab/nsp31417L1417PcTacCa11B.1.4970.000315
ORF1ab/nsp31417L1417PcTacCa11B.400.000364
ORF1ab/nsp31417L1417PcTacCa11C.180.002591
ORF1ab/nsp31417L1417PcTacCa11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.