CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1417 | L1417L | L2235L | syn | Cta | Tta | 16634 | 16519 | 0.993086 | 6968-6970 |
ORF1ab/nsp3 | 1417 | L1417L | L2235L | syn | ctA | ctG | 16634 | 93 | 0.00559096 | 6968-6970 |
ORF1ab/nsp3 | 1417 | L1417L | L2235L | syn | ctA | ctC | 16634 | 10 | 0.000601178 | 6968-6970 |
ORF1ab/nsp3 | 1417 | L1417L | L2235L | syn | ctA | ctT | 16634 | 10 | 0.000601178 | 6968-6970 |
ORF1ab/nsp3 | 1417 | L1417L | L2235L | syn | CtA | TtG | 16634 | 2 | 0.000120236 | 6968-6970 |
Details of the mutation L1417L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 16519 | 16634 | All | 0.003159 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 93 | 16634 | All | 0.000018 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 10 | 16634 | All | 0.000002 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 10 | 16634 | All | 0.000002 |
ORF1ab/nsp3 | 1417 | L1417L | CtA | TtG | 2 | 16634 | All | 0 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 11989 | 12002 | B.1.1.7 | 0.010733 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 11 | 12002 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1417 | L1417L | CtA | TtG | 2 | 12002 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1092 | 1093 | AY.103 | 0.00678 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1093 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 399 | 417 | AY.4 | 0.000621 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 16 | 417 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 2 | 417 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 252 | 254 | B.1.617.2 | 0.000949 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 2 | 254 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 252 | 252 | AY.4.2.1 | 0.037545 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 230 | 232 | AY.43 | 0.001019 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 232 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 232 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 160 | 161 | B.1.221 | 0.011365 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 161 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 138 | 154 | AY.3 | 0.001373 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 16 | 154 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 131 | 131 | AY.88 | 0.115827 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 102 | 104 | B.1.1 | 0.00185 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 2 | 104 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 101 | 101 | B.1.351 | 0.003002 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 89 | 89 | B.1.2 | 0.000784 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 80 | 86 | AY.25 | 0.000481 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 6 | 86 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 85 | 85 | AY.4.2 | 0.001844 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 83 | 84 | B.1.177 | 0.001093 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 84 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 77 | 78 | P.1 | 0.001213 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 78 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 64 | 64 | B.1.1.329 | 0.246154 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 56 | 56 | B.1.1.198 | 0.082232 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 43 | 53 | AY.44 | 0.000262 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 10 | 53 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 52 | 52 | AY.116.1 | 0.016194 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 42 | 42 | AY.75 | 0.002353 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 40 | 40 | B.1.36.34 | 0.851064 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 38 | 40 | B.1.429 | 0.000894 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 2 | 40 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 33 | 33 | AY.119 | 0.001165 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 33 | 33 | B.1.177.7 | 0.00544 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 30 | 30 | AY.67 | 0.013928 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 30 | 30 | B.1.427 | 0.001515 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 29 | 29 | B.1.258 | 0.00193 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 25 | 25 | AY.42 | 0.001006 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 21 | 24 | AY.102 | 0.000557 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 2 | 24 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 24 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 13 | 24 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 11 | 24 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 21 | 23 | AY.39 | 0.000519 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 23 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 23 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 23 | 23 | B.1.1.214 | 0.001276 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 21 | 22 | AY.5 | 0.000434 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 22 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 20 | 20 | B.1.526 | 0.00047 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 19 | 19 | B.1.574 | 0.04086 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 18 | 18 | AY.99.2 | 0.001659 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 14 | 14 | B.1.1.164 | 0.072165 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 13 | 13 | Q.1 | 0.001642 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 11 | 11 | B.1.1.286 | 0.031884 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 11 | 11 | D.2 | 0.000825 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 10 | 11 | R.1 | 0.0009 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 11 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 9 | 10 | AY.54 | 0.000858 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 10 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 9 | 9 | B.1.177.83 | 0.013333 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 7 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 7 | 7 | B.1.1.317 | 0.002882 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 7 | 7 | B.1.588 | 0.006369 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | B.1.177.35 | 0.004147 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | B.1.499 | 0.006303 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 6 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 6 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | B.1.1.322 | 0.04386 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 4 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 4 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 2 | 3 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 3 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.177.3 | 0.022901 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.177.42 | 0.002683 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.199 | 0.012397 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 2 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 2 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.171 | 0.007353 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 2 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 2 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctC | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.438.2 | 0.019231 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctT | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.1.67 | 0.043478 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | C.7 | 0.034483 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | N.10 | 0.029412 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1417 | L1417L | Cta | Tta | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp3 | 1417 | L1417L | ctA | ctG | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|