CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1328F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31328L1328FL2146FnonsynCttTtt560556040.9998226701-6703
ORF1ab/nsp31328L1328FL2146FnonsynCtTTtC560510.0001784126701-6703

Details of the mutation L1328F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31328L1328FCttTtt56045605All0.001072
ORF1ab/nsp31328L1328FCtTTtC15605All0
ORF1ab/nsp31328L1328FCttTtt11381138B.1.1.70.001019
ORF1ab/nsp31328L1328FCttTtt355355AY.40.000553
ORF1ab/nsp31328L1328FCttTtt325325AY.250.001955
ORF1ab/nsp31328L1328FCttTtt305305B.1.1770.004016
ORF1ab/nsp31328L1328FCttTtt273273AY.440.001662
ORF1ab/nsp31328L1328FCttTtt240240AY.4.20.005205
ORF1ab/nsp31328L1328FCttTtt235235AY.60.009665
ORF1ab/nsp31328L1328FCttTtt204204AY.5.40.056447
ORF1ab/nsp31328L1328FCttTtt192192B.1.617.20.000723
ORF1ab/nsp31328L1328FCttTtt168168B.1.5260.003949
ORF1ab/nsp31328L1328FCttTtt152152B.1.20.001338
ORF1ab/nsp31328L1328FCttTtt128128B.10.001172
ORF1ab/nsp31328L1328FCttTtt108108AY.30.001074
ORF1ab/nsp31328L1328FCttTtt8686B.1.3690.024529
ORF1ab/nsp31328L1328FCttTtt7878P.10.001229
ORF1ab/nsp31328L1328FCttTtt7272B.1.36.240.444444
ORF1ab/nsp31328L1328FCttTtt7070AY.430.00031
ORF1ab/nsp31328L1328FCttTtt6262AY.270.004013
ORF1ab/nsp31328L1328FCttTtt5858B.1.10.001052
ORF1ab/nsp31328L1328FCttTtt5555B.1.438.10.005899
ORF1ab/nsp31328L1328FCttTtt4949AY.1030.000304
ORF1ab/nsp31328L1328FCttTtt4242B.1.4270.002121
ORF1ab/nsp31328L1328FCttTtt4141AN.10.82
ORF1ab/nsp31328L1328FCttTtt4141AY.610.004296
ORF1ab/nsp31328L1328FCttTtt4141B.1.177.860.007522
ORF1ab/nsp31328L1328FCttTtt3434AY.50.000702
ORF1ab/nsp31328L1328FCttTtt3333B.1.1.5190.00131
ORF1ab/nsp31328L1328FCttTtt3030AY.290.000473
ORF1ab/nsp31328L1328FCttTtt2828B.1.1.3120.053537
ORF1ab/nsp31328L1328FCttTtt2626AY.99.20.002396
ORF1ab/nsp31328L1328FCttTtt2626B.1.1460.110169
ORF1ab/nsp31328L1328FCttTtt2525AY.1020.000663
ORF1ab/nsp31328L1328FCttTtt2525B.1.1.3811
ORF1ab/nsp31328L1328FCttTtt2424AY.140.002112
ORF1ab/nsp31328L1328FCttTtt2121B.1.1.3180.006337
ORF1ab/nsp31328L1328FCttTtt2020AY.330.001336
ORF1ab/nsp31328L1328FCttTtt2020B.1.4000.00858
ORF1ab/nsp31328L1328FCttTtt1717B.1.1600.00053
ORF1ab/nsp31328L1328FCttTtt1717B.1.5820.008342
ORF1ab/nsp31328L1328FCttTtt1616AY.390.000395
ORF1ab/nsp31328L1328FCttTtt1616AY.9.20.000588
ORF1ab/nsp31328L1328FCttTtt1616B.1.4290.000376
ORF1ab/nsp31328L1328FCttTtt1616D.20.001201
ORF1ab/nsp31328L1328FCttTtt1515AY.1190.00053
ORF1ab/nsp31328L1328FCttTtt1515AY.230.001046
ORF1ab/nsp31328L1328FCttTtt1414B.1.1.2140.000776
ORF1ab/nsp31328L1328FCttTtt1313AY.1000.000598
ORF1ab/nsp31328L1328FCttTtt1313AY.3.10.001108
ORF1ab/nsp31328L1328FCttTtt1313B.1.596.10.121495
ORF1ab/nsp31328L1328FCttTtt1212B.1.360.001751
ORF1ab/nsp31328L1328FCttTtt1212C.390.226415
ORF1ab/nsp31328L1328FCttTtt1111B.1.2210.000781
ORF1ab/nsp31328L1328FCttTtt1111B.1.2580.000732
ORF1ab/nsp31328L1328FCttTtt1111B.1.466.20.004304
ORF1ab/nsp31328L1328FCttTtt1111B.1.5960.000959
ORF1ab/nsp31328L1328FCttTtt99AY.200.00035
ORF1ab/nsp31328L1328FCttTtt99AY.39.10.000357
ORF1ab/nsp31328L1328FCttTtt99B.1.258.200.142857
ORF1ab/nsp31328L1328FCttTtt99B.1.3510.000268
ORF1ab/nsp31328L1328FCttTtt99B.1.36.290.004656
ORF1ab/nsp31328L1328FCttTtt88AY.750.000448
ORF1ab/nsp31328L1328FCttTtt88B.1.2410.006494
ORF1ab/nsp31328L1328FCttTtt77AY.1200.00026
ORF1ab/nsp31328L1328FCttTtt77AY.1210.000947
ORF1ab/nsp31328L1328FCttTtt77AY.260.000198
ORF1ab/nsp31328L1328FCttTtt77AY.4.50.000752
ORF1ab/nsp31328L1328FCttTtt77AY.540.000667
ORF1ab/nsp31328L1328FCttTtt77B.1.1.100.007804
ORF1ab/nsp31328L1328FCttTtt77B.1.177.70.001154
ORF1ab/nsp31328L1328FCttTtt77B.1.617.10.000903
ORF1ab/nsp31328L1328FCttTtt77C.370.000812
ORF1ab/nsp31328L1328FCttTtt77Q.80.001154
ORF1ab/nsp31328L1328FCttTtt66AY.1170.000507
ORF1ab/nsp31328L1328FCttTtt66B.1.1.250.003411
ORF1ab/nsp31328L1328FCttTtt66B.1.1.2840.000644
ORF1ab/nsp31328L1328FCttTtt66B.1.1.630.002315
ORF1ab/nsp31328L1328FCttTtt66B.1.177.160.003987
ORF1ab/nsp31328L1328FCttTtt66B.1.2400.001293
ORF1ab/nsp31328L1328FCttTtt66B.1.2430.000418
ORF1ab/nsp31328L1328FCttTtt66B.1.5670.02
ORF1ab/nsp31328L1328FCttTtt66R.10.00054
ORF1ab/nsp31328L1328FCttTtt55A.2.30.023697
ORF1ab/nsp31328L1328FCttTtt55AY.10.001979
ORF1ab/nsp31328L1328FCttTtt55AY.1180.000313
ORF1ab/nsp31328L1328FCttTtt55AY.450.000608
ORF1ab/nsp31328L1328FCttTtt55AY.460.00052
ORF1ab/nsp31328L1328FCttTtt55B.1.1.2220.00102
ORF1ab/nsp31328L1328FCttTtt55B.1.160.250.055556
ORF1ab/nsp31328L1328FCttTtt55B.1.177.560.003338
ORF1ab/nsp31328L1328FCttTtt55B.1.2320.002687
ORF1ab/nsp31328L1328FCttTtt55B.1.2390.006105
ORF1ab/nsp31328L1328FCttTtt55P.1.140.000239
ORF1ab/nsp31328L1328FCttTtt55P.20.000933
ORF1ab/nsp31328L1328FCttTtt44AY.75.10.000721
ORF1ab/nsp31328L1328FCttTtt44AY.9.10.000335
ORF1ab/nsp31328L1328FCttTtt44AY.930.001092
ORF1ab/nsp31328L1328FCttTtt44B.1.1.2730.027027
ORF1ab/nsp31328L1328FCttTtt44B.1.1.280.001245
ORF1ab/nsp31328L1328FCttTtt44B.1.177.730.002265
ORF1ab/nsp31328L1328FCttTtt44B.1.3110.001098
ORF1ab/nsp31328L1328FCttTtt44B.1.5950.001044
ORF1ab/nsp31328L1328FCttTtt44B.1.760.045455
ORF1ab/nsp31328L1328FCttTtt33A.2.50.001497
ORF1ab/nsp31328L1328FCttTtt33A.280.007937
ORF1ab/nsp31328L1328FCttTtt33AY.1130.000427
ORF1ab/nsp31328L1328FCttTtt33AY.29.10.000662
ORF1ab/nsp31328L1328FCttTtt33AY.300.001187
ORF1ab/nsp31328L1328FCttTtt33AY.370.000948
ORF1ab/nsp31328L1328FCttTtt33AY.400.002893
ORF1ab/nsp31328L1328FCttTtt33AY.480.001395
ORF1ab/nsp31328L1328FCttTtt33AY.650.001599
ORF1ab/nsp31328L1328FCttTtt33AY.70.000588
ORF1ab/nsp31328L1328FCttTtt33AY.770.003382
ORF1ab/nsp31328L1328FCttTtt33AY.910.002191
ORF1ab/nsp31328L1328FCttTtt33B0.000383
ORF1ab/nsp31328L1328FCttTtt33B.1.1.10.00098
ORF1ab/nsp31328L1328FCttTtt33B.1.1.2160.002671
ORF1ab/nsp31328L1328FCttTtt33B.1.1.3060.001315
ORF1ab/nsp31328L1328FCttTtt33B.1.1.330.001263
ORF1ab/nsp31328L1328FCttTtt33B.1.1.4340.001046
ORF1ab/nsp31328L1328FCttTtt33B.1.1420.008696
ORF1ab/nsp31328L1328FCttTtt33B.1.177.210.000229
ORF1ab/nsp31328L1328FCttTtt33B.1.177.440.001557
ORF1ab/nsp31328L1328FCttTtt33B.1.214.20.001799
ORF1ab/nsp31328L1328FCttTtt33B.1.2340.000396
ORF1ab/nsp31328L1328FCttTtt33B.1.3460.003932
ORF1ab/nsp31328L1328FCttTtt33B.1.4740.005703
ORF1ab/nsp31328L1328FCttTtt33B.1.6210.000266
ORF1ab/nsp31328L1328FCttTtt33P.30.004785
ORF1ab/nsp31328L1328FCttTtt33Q.30.000435
ORF1ab/nsp31328L1328FCtTTtC120.055556
ORF1ab/nsp31328L1328FCttTtt120.055556
ORF1ab/nsp31328L1328FCttTtt22AA.20.015385
ORF1ab/nsp31328L1328FCttTtt22AY.160.000759
ORF1ab/nsp31328L1328FCttTtt22AY.240.000862
ORF1ab/nsp31328L1328FCttTtt22AY.320.001065
ORF1ab/nsp31328L1328FCttTtt22AY.46.60.000144
ORF1ab/nsp31328L1328FCttTtt22AY.550.001835
ORF1ab/nsp31328L1328FCttTtt22AY.590.001059
ORF1ab/nsp31328L1328FCttTtt22AY.640.00119
ORF1ab/nsp31328L1328FCttTtt22AY.7.10.000225
ORF1ab/nsp31328L1328FCttTtt22AY.820.002714
ORF1ab/nsp31328L1328FCttTtt22AY.850.000854
ORF1ab/nsp31328L1328FCttTtt22AY.920.000575
ORF1ab/nsp31328L1328FCttTtt22AY.98.10.000097
ORF1ab/nsp31328L1328FCttTtt22AY.990.002099
ORF1ab/nsp31328L1328FCttTtt22B.1.1.1920.004619
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2180.015385
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2910.001485
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2940.002532
ORF1ab/nsp31328L1328FCttTtt22B.1.1.3160.00185
ORF1ab/nsp31328L1328FCttTtt22B.1.1.4090.005666
ORF1ab/nsp31328L1328FCttTtt22B.1.1.700.000682
ORF1ab/nsp31328L1328FCttTtt22B.1.110.30.001437
ORF1ab/nsp31328L1328FCttTtt22B.1.1450.105263
ORF1ab/nsp31328L1328FCttTtt22B.1.177.450.000762
ORF1ab/nsp31328L1328FCttTtt22B.1.177.620.002384
ORF1ab/nsp31328L1328FCttTtt22B.1.177.820.000955
ORF1ab/nsp31328L1328FCttTtt22B.1.2060.001631
ORF1ab/nsp31328L1328FCttTtt22B.1.221.30.001667
ORF1ab/nsp31328L1328FCttTtt22B.1.4110.007407
ORF1ab/nsp31328L1328FCttTtt22B.1.4940.068966
ORF1ab/nsp31328L1328FCttTtt22B.1.5610.000794
ORF1ab/nsp31328L1328FCttTtt22B.1.5750.000607
ORF1ab/nsp31328L1328FCttTtt22B.1.6370.000146
ORF1ab/nsp31328L1328FCttTtt22B.470.040816
ORF1ab/nsp31328L1328FCttTtt22C.36.30.001134
ORF1ab/nsp31328L1328FCttTtt22C.36.3.10.005435
ORF1ab/nsp31328L1328FCttTtt22P.1.70.000639
ORF1ab/nsp31328L1328FCttTtt11A.10.000282
ORF1ab/nsp31328L1328FCttTtt11A.20.000662
ORF1ab/nsp31328L1328FCttTtt11AE.80.000489
ORF1ab/nsp31328L1328FCttTtt11AU.10.001266
ORF1ab/nsp31328L1328FCttTtt11AY.1010.00049
ORF1ab/nsp31328L1328FCttTtt11AY.1050.000643
ORF1ab/nsp31328L1328FCttTtt11AY.1080.001103
ORF1ab/nsp31328L1328FCttTtt11AY.1140.000231
ORF1ab/nsp31328L1328FCttTtt11AY.1160.000287
ORF1ab/nsp31328L1328FCttTtt11AY.120.10.000321
ORF1ab/nsp31328L1328FCttTtt11AY.130.000161
ORF1ab/nsp31328L1328FCttTtt11AY.340.000097
ORF1ab/nsp31328L1328FCttTtt11AY.34.10.00051
ORF1ab/nsp31328L1328FCttTtt11AY.360.000148
ORF1ab/nsp31328L1328FCttTtt11AY.4.40.000409
ORF1ab/nsp31328L1328FCttTtt11AY.410.000294
ORF1ab/nsp31328L1328FCttTtt11AY.420.00004
ORF1ab/nsp31328L1328FCttTtt11AY.46.40.000165
ORF1ab/nsp31328L1328FCttTtt11AY.510.000909
ORF1ab/nsp31328L1328FCttTtt11AY.520.000814
ORF1ab/nsp31328L1328FCttTtt11AY.530.000288
ORF1ab/nsp31328L1328FCttTtt11AY.7.20.000559
ORF1ab/nsp31328L1328FCttTtt11AY.710.000475
ORF1ab/nsp31328L1328FCttTtt11AY.840.000437
ORF1ab/nsp31328L1328FCttTtt11AY.90.000068
ORF1ab/nsp31328L1328FCttTtt11AY.950.000761
ORF1ab/nsp31328L1328FCttTtt11AY.970.001701
ORF1ab/nsp31328L1328FCttTtt11AY.980.000079
ORF1ab/nsp31328L1328FCttTtt11B.1.1.1890.001513
ORF1ab/nsp31328L1328FCttTtt11B.1.1.2070.001182
ORF1ab/nsp31328L1328FCttTtt11B.1.1.2550.00303
ORF1ab/nsp31328L1328FCttTtt11B.1.1.270.00565
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3110.000358
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3150.008475
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3170.000412
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3370.003597
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3480.000796
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3720.000689
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3980.003226
ORF1ab/nsp31328L1328FCttTtt11B.1.1.400.034483
ORF1ab/nsp31328L1328FCttTtt11B.1.1.4660.008696
ORF1ab/nsp31328L1328FCttTtt11B.1.1.500.000679
ORF1ab/nsp31328L1328FCttTtt11B.1.1.5230.001563
ORF1ab/nsp31328L1328FCttTtt11B.1.1.740.00431
ORF1ab/nsp31328L1328FCttTtt11B.1.1390.000733
ORF1ab/nsp31328L1328FCttTtt11B.1.1730.026316
ORF1ab/nsp31328L1328FCttTtt11B.1.177.100.000878
ORF1ab/nsp31328L1328FCttTtt11B.1.177.110.001698
ORF1ab/nsp31328L1328FCttTtt11B.1.177.150.000631
ORF1ab/nsp31328L1328FCttTtt11B.1.177.240.001295
ORF1ab/nsp31328L1328FCttTtt11B.1.177.410.0025
ORF1ab/nsp31328L1328FCttTtt11B.1.177.430.001477
ORF1ab/nsp31328L1328FCttTtt11B.1.177.580.001332
ORF1ab/nsp31328L1328FCttTtt11B.1.177.590.016129
ORF1ab/nsp31328L1328FCttTtt11B.1.177.80.000752
ORF1ab/nsp31328L1328FCttTtt11B.1.2360.002053
ORF1ab/nsp31328L1328FCttTtt11B.1.258.170.000104
ORF1ab/nsp31328L1328FCttTtt11B.1.264.10.047619
ORF1ab/nsp31328L1328FCttTtt11B.1.3130.006579
ORF1ab/nsp31328L1328FCttTtt11B.1.3380.008621
ORF1ab/nsp31328L1328FCttTtt11B.1.351.50.0006
ORF1ab/nsp31328L1328FCttTtt11B.1.36.80.001
ORF1ab/nsp31328L1328FCttTtt11B.1.3750.00082
ORF1ab/nsp31328L1328FCttTtt11B.1.3980.002976
ORF1ab/nsp31328L1328FCttTtt11B.1.4160.001269
ORF1ab/nsp31328L1328FCttTtt11B.1.4200.010417
ORF1ab/nsp31328L1328FCttTtt11B.1.4380.006536
ORF1ab/nsp31328L1328FCttTtt11B.1.438.40.021277
ORF1ab/nsp31328L1328FCttTtt11B.1.4560.003268
ORF1ab/nsp31328L1328FCttTtt11B.1.5130.013889
ORF1ab/nsp31328L1328FCttTtt11B.1.5250.000113
ORF1ab/nsp31328L1328FCttTtt11B.1.5360.02381
ORF1ab/nsp31328L1328FCttTtt11B.1.6090.000479
ORF1ab/nsp31328L1328FCttTtt11B.1.617.30.002985
ORF1ab/nsp31328L1328FCttTtt11B.4.40.018868
ORF1ab/nsp31328L1328FCttTtt11B.60.00091
ORF1ab/nsp31328L1328FCttTtt11B.6.60.000889
ORF1ab/nsp31328L1328FCttTtt11C.10.002392
ORF1ab/nsp31328L1328FCttTtt11C.350.000774
ORF1ab/nsp31328L1328FCttTtt11N.50.001767
ORF1ab/nsp31328L1328FCttTtt11P.1.10.000318
ORF1ab/nsp31328L1328FCttTtt11P.1.100.000269
ORF1ab/nsp31328L1328FCttTtt11P.1.170.000162
ORF1ab/nsp31328L1328FCttTtt11P.1.17.10.000875
ORF1ab/nsp31328L1328FCttTtt11Q.10.000126