CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1299L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31299L1299LL2117LsynttAttG391234630.8852256614-6616
ORF1ab/nsp31299L1299LL2117LsynTtaCta39124490.1147756614-6616

Details of the mutation L1299L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31299L1299LttAttG34633912All0.000662
ORF1ab/nsp31299L1299LTtaCta4493912All0.000086
ORF1ab/nsp31299L1299LttAttG725725AY.39.10.02872
ORF1ab/nsp31299L1299LttAttG421456B.1.1.70.000377
ORF1ab/nsp31299L1299LTtaCta35456B.1.1.70.000031
ORF1ab/nsp31299L1299LttAttG303345AY.40.000472
ORF1ab/nsp31299L1299LTtaCta42345AY.40.000065
ORF1ab/nsp31299L1299LTtaCta248330AY.440.00151
ORF1ab/nsp31299L1299LttAttG82330AY.440.000499
ORF1ab/nsp31299L1299LttAttG163163B.1.5730.993902
ORF1ab/nsp31299L1299LttAttG156159AY.470.004852
ORF1ab/nsp31299L1299LTtaCta3159AY.470.000093
ORF1ab/nsp31299L1299LttAttG77114B.1.617.20.00029
ORF1ab/nsp31299L1299LTtaCta37114B.1.617.20.000139
ORF1ab/nsp31299L1299LttAttG109112B.10.000998
ORF1ab/nsp31299L1299LTtaCta3112B.10.000027
ORF1ab/nsp31299L1299LttAttG100100B.1.10.001814
ORF1ab/nsp31299L1299LttAttG9494B.1.4290.002212
ORF1ab/nsp31299L1299LttAttG6869B.1.1770.000895
ORF1ab/nsp31299L1299LTtaCta169B.1.1770.000013
ORF1ab/nsp31299L1299LttAttG6767B.1.1.4340.023353
ORF1ab/nsp31299L1299LttAttG6162AY.1030.000379
ORF1ab/nsp31299L1299LTtaCta162AY.1030.000006
ORF1ab/nsp31299L1299LttAttG5861B.1.5260.001363
ORF1ab/nsp31299L1299LTtaCta361B.1.5260.000071
ORF1ab/nsp31299L1299LttAttG5160AY.430.000226
ORF1ab/nsp31299L1299LTtaCta960AY.430.00004
ORF1ab/nsp31299L1299LttAttG5959AY.30.000587
ORF1ab/nsp31299L1299LttAttG4455B.1.20.000387
ORF1ab/nsp31299L1299LTtaCta1155B.1.20.000097
ORF1ab/nsp31299L1299LttAttG5252P.10.000819
ORF1ab/nsp31299L1299LttAttG4747AY.200.001827
ORF1ab/nsp31299L1299LttAttG4045AY.250.000241
ORF1ab/nsp31299L1299LTtaCta545AY.250.00003
ORF1ab/nsp31299L1299LttAttG3941AY.1200.00145
ORF1ab/nsp31299L1299LTtaCta241AY.1200.000074
ORF1ab/nsp31299L1299LttAttG4040AY.390.000988
ORF1ab/nsp31299L1299LttAttG3535B.1.1950.175879
ORF1ab/nsp31299L1299LttAttG2929B.1.2210.00206
ORF1ab/nsp31299L1299LttAttG2727AY.1100.003043
ORF1ab/nsp31299L1299LttAttG2626B.1.36.380.042693
ORF1ab/nsp31299L1299LttAttG2424B.1.1.1000.96
ORF1ab/nsp31299L1299LttAttG2222B.1.3510.000654
ORF1ab/nsp31299L1299LttAttG2121AY.9.20.000771
ORF1ab/nsp31299L1299LttAttG1919B.1.1600.000593
ORF1ab/nsp31299L1299LttAttG1216AY.260.00034
ORF1ab/nsp31299L1299LTtaCta416AY.260.000113
ORF1ab/nsp31299L1299LttAttG1516B.1.4270.000757
ORF1ab/nsp31299L1299LTtaCta116B.1.4270.00005
ORF1ab/nsp31299L1299LttAttG1414AY.320.007455
ORF1ab/nsp31299L1299LttAttG1314B.1.1.5190.000516
ORF1ab/nsp31299L1299LTtaCta114B.1.1.5190.00004
ORF1ab/nsp31299L1299LttAttG1212AY.98.10.000581
ORF1ab/nsp31299L1299LttAttG1212B.1.1.5120.342857
ORF1ab/nsp31299L1299LttAttG1212B.1.177.820.005728
ORF1ab/nsp31299L1299LttAttG911AY.290.000142
ORF1ab/nsp31299L1299LTtaCta211AY.290.000032
ORF1ab/nsp31299L1299LttAttG1111B.1.1.2220.002244
ORF1ab/nsp31299L1299LttAttG1111B.1.350.09322
ORF1ab/nsp31299L1299LttAttG910AY.4.20.000195
ORF1ab/nsp31299L1299LTtaCta110AY.4.20.000022
ORF1ab/nsp31299L1299LttAttG89AY.50.000165
ORF1ab/nsp31299L1299LTtaCta19AY.50.000021
ORF1ab/nsp31299L1299LttAttG99AY.610.000943
ORF1ab/nsp31299L1299LttAttG99AY.750.000504
ORF1ab/nsp31299L1299LttAttG99B.1.5750.002731
ORF1ab/nsp31299L1299LttAttG88AY.1020.000212
ORF1ab/nsp31299L1299LttAttG88C.370.000929
ORF1ab/nsp31299L1299LttAttG46AY.1130.00057
ORF1ab/nsp31299L1299LTtaCta26AY.1130.000285
ORF1ab/nsp31299L1299LTtaCta66AY.1170.000507
ORF1ab/nsp31299L1299LttAttG66AY.230.000418
ORF1ab/nsp31299L1299LttAttG46AY.340.000388
ORF1ab/nsp31299L1299LTtaCta26AY.340.000194
ORF1ab/nsp31299L1299LTtaCta46AY.460.000416
ORF1ab/nsp31299L1299LttAttG26AY.460.000208
ORF1ab/nsp31299L1299LTtaCta56AY.540.000477
ORF1ab/nsp31299L1299LttAttG16AY.540.000095
ORF1ab/nsp31299L1299LttAttG66B.260.088235
ORF1ab/nsp31299L1299LttAttG55AY.140.00044
ORF1ab/nsp31299L1299LttAttG55AY.810.00996
ORF1ab/nsp31299L1299LttAttG45B.1.6210.000354
ORF1ab/nsp31299L1299LTtaCta15B.1.6210.000089
ORF1ab/nsp31299L1299LttAttG44AY.590.002119
ORF1ab/nsp31299L1299LttAttG44AY.60.000165
ORF1ab/nsp31299L1299LttAttG44AY.75.10.000721
ORF1ab/nsp31299L1299LttAttG34B.1.2580.0002
ORF1ab/nsp31299L1299LTtaCta14B.1.2580.000067
ORF1ab/nsp31299L1299LttAttG44B.1.36.180.001681
ORF1ab/nsp31299L1299LttAttG44B.1.4130.017021
ORF1ab/nsp31299L1299LTtaCta24B.1.438.10.000215
ORF1ab/nsp31299L1299LttAttG24B.1.438.10.000215
ORF1ab/nsp31299L1299LttAttG44B.1.466.10.028777
ORF1ab/nsp31299L1299LttAttG33AY.1000.000138
ORF1ab/nsp31299L1299LttAttG33AY.1180.000188
ORF1ab/nsp31299L1299LttAttG33AY.1210.000406
ORF1ab/nsp31299L1299LttAttG33AY.4.40.001227
ORF1ab/nsp31299L1299LttAttG23AY.99.20.000184
ORF1ab/nsp31299L1299LTtaCta13AY.99.20.000092
ORF1ab/nsp31299L1299LttAttG33B.1.1.2320.005445
ORF1ab/nsp31299L1299LttAttG33B.1.1.2840.000322
ORF1ab/nsp31299L1299LttAttG33B.1.1.3180.000905
ORF1ab/nsp31299L1299LttAttG33B.1.1.4160.002715
ORF1ab/nsp31299L1299LttAttG33B.1.1.700.001023
ORF1ab/nsp31299L1299LttAttG33B.1.2340.000396
ORF1ab/nsp31299L1299LttAttG33B.1.5170.001281
ORF1ab/nsp31299L1299LttAttG23B.1.5250.000226
ORF1ab/nsp31299L1299LTtaCta13B.1.5250.000113
ORF1ab/nsp31299L1299LttAttG33P.1.100.000808
ORF1ab/nsp31299L1299LTtaCta33P.20.00056
ORF1ab/nsp31299L1299LttAttG22A.23.10.001408
ORF1ab/nsp31299L1299LttAttG22AY.3.10.000171
ORF1ab/nsp31299L1299LttAttG22AY.4.50.000215
ORF1ab/nsp31299L1299LttAttG22AY.420.00008
ORF1ab/nsp31299L1299LttAttG12AY.5.30.000337
ORF1ab/nsp31299L1299LTtaCta12AY.5.30.000337
ORF1ab/nsp31299L1299LttAttG22B.1.1.3160.00185
ORF1ab/nsp31299L1299LttAttG22B.1.1.3170.000823
ORF1ab/nsp31299L1299LttAttG22B.1.1490.006849
ORF1ab/nsp31299L1299LTtaCta22B.1.177.520.003515
ORF1ab/nsp31299L1299LttAttG22B.1.2320.001075
ORF1ab/nsp31299L1299LttAttG22B.1.36.310.003503
ORF1ab/nsp31299L1299LttAttG22B.1.4330.00639
ORF1ab/nsp31299L1299LttAttG22B.1.5770.001375
ORF1ab/nsp31299L1299LttAttG22B.1.6370.000146
ORF1ab/nsp31299L1299LttAttG22B.1.80.003945
ORF1ab/nsp31299L1299LttAttG22C.160.002121
ORF1ab/nsp31299L1299LttAttG22C.360.001821
ORF1ab/nsp31299L1299LttAttG22P.1.140.000096
ORF1ab/nsp31299L1299LttAttG22Q.10.000253
ORF1ab/nsp31299L1299LttAttG22Q.80.00033
ORF1ab/nsp31299L1299LttAttG22R.10.00018
ORF1ab/nsp31299L1299LttAttG22W.40.002703
ORF1ab/nsp31299L1299LttAttG110.055556
ORF1ab/nsp31299L1299LttAttG11A.10.000282
ORF1ab/nsp31299L1299LttAttG11A.20.000662
ORF1ab/nsp31299L1299LttAttG11A.2.50.000499
ORF1ab/nsp31299L1299LTtaCta11AY.1050.000643
ORF1ab/nsp31299L1299LttAttG11AY.1070.000466
ORF1ab/nsp31299L1299LttAttG11AY.1190.000035
ORF1ab/nsp31299L1299LTtaCta11AY.120.20.001285
ORF1ab/nsp31299L1299LttAttG11AY.160.00038
ORF1ab/nsp31299L1299LttAttG11AY.16.10.00047
ORF1ab/nsp31299L1299LttAttG11AY.270.000065
ORF1ab/nsp31299L1299LttAttG11AY.300.000396
ORF1ab/nsp31299L1299LttAttG11AY.330.000067
ORF1ab/nsp31299L1299LttAttG11AY.370.000316
ORF1ab/nsp31299L1299LttAttG11AY.39.1.10.000725
ORF1ab/nsp31299L1299LttAttG11AY.4.2.10.000149
ORF1ab/nsp31299L1299LttAttG11AY.46.60.000072
ORF1ab/nsp31299L1299LTtaCta11AY.620.000436
ORF1ab/nsp31299L1299LttAttG11AY.660.00107
ORF1ab/nsp31299L1299LttAttG11AY.700.000209
ORF1ab/nsp31299L1299LttAttG11AY.710.000475
ORF1ab/nsp31299L1299LttAttG11AY.850.000427
ORF1ab/nsp31299L1299LttAttG11AY.880.000884
ORF1ab/nsp31299L1299LttAttG11AZ.20.000821
ORF1ab/nsp31299L1299LttAttG11B0.000128
ORF1ab/nsp31299L1299LttAttG11B.1.1.1090.04
ORF1ab/nsp31299L1299LttAttG11B.1.1.1210.002427
ORF1ab/nsp31299L1299LttAttG11B.1.1.1890.001513
ORF1ab/nsp31299L1299LttAttG11B.1.1.2050.003717
ORF1ab/nsp31299L1299LttAttG11B.1.1.2160.00089
ORF1ab/nsp31299L1299LttAttG11B.1.1.250.000569
ORF1ab/nsp31299L1299LttAttG11B.1.1.2770.000759
ORF1ab/nsp31299L1299LTtaCta11B.1.1.2790.001121
ORF1ab/nsp31299L1299LttAttG11B.1.1.3120.001912
ORF1ab/nsp31299L1299LTtaCta11B.1.1.3260.001761
ORF1ab/nsp31299L1299LttAttG11B.1.1.3350.012987
ORF1ab/nsp31299L1299LttAttG11B.1.1.3690.000446
ORF1ab/nsp31299L1299LttAttG11B.1.1.3700.012658
ORF1ab/nsp31299L1299LttAttG11B.1.1.3710.010417
ORF1ab/nsp31299L1299LttAttG11B.1.1.3720.000689
ORF1ab/nsp31299L1299LttAttG11B.1.1.3760.005952
ORF1ab/nsp31299L1299LttAttG11B.1.1.4020.011111
ORF1ab/nsp31299L1299LttAttG11B.1.1.740.00431
ORF1ab/nsp31299L1299LttAttG11B.1.1.820.038462
ORF1ab/nsp31299L1299LttAttG11B.1.1280.000635
ORF1ab/nsp31299L1299LttAttG11B.1.1630.02439
ORF1ab/nsp31299L1299LttAttG11B.1.177.170.000821
ORF1ab/nsp31299L1299LttAttG11B.1.177.420.000894
ORF1ab/nsp31299L1299LttAttG11B.1.177.440.000519
ORF1ab/nsp31299L1299LttAttG11B.1.177.50.001242
ORF1ab/nsp31299L1299LttAttG11B.1.177.580.001332
ORF1ab/nsp31299L1299LttAttG11B.1.177.860.000183
ORF1ab/nsp31299L1299LttAttG11B.1.2330.014085
ORF1ab/nsp31299L1299LttAttG11B.1.258.170.000104
ORF1ab/nsp31299L1299LttAttG11B.1.351.20.000303
ORF1ab/nsp31299L1299LttAttG11B.1.351.50.0006
ORF1ab/nsp31299L1299LttAttG11B.1.3610.001289
ORF1ab/nsp31299L1299LttAttG11B.1.3690.000285
ORF1ab/nsp31299L1299LTtaCta11B.1.4020.009804
ORF1ab/nsp31299L1299LttAttG11B.1.4080.00369
ORF1ab/nsp31299L1299LttAttG11B.1.466.20.000391
ORF1ab/nsp31299L1299LTtaCta11B.1.4670.04
ORF1ab/nsp31299L1299LttAttG11B.1.4700.001404
ORF1ab/nsp31299L1299LttAttG11B.1.5200.021739
ORF1ab/nsp31299L1299LttAttG11B.1.5240.001406
ORF1ab/nsp31299L1299LttAttG11B.1.5330.009615
ORF1ab/nsp31299L1299LttAttG11B.1.5540.004405
ORF1ab/nsp31299L1299LttAttG11B.1.5610.000397
ORF1ab/nsp31299L1299LttAttG11B.1.5960.000087
ORF1ab/nsp31299L1299LttAttG11B.1.6060.006024
ORF1ab/nsp31299L1299LttAttG11B.1.6090.000479
ORF1ab/nsp31299L1299LttAttG11B.1.617.10.000129
ORF1ab/nsp31299L1299LttAttG11B.1.6310.003367
ORF1ab/nsp31299L1299LttAttG11B.230.002924
ORF1ab/nsp31299L1299LttAttG11B.280.003279
ORF1ab/nsp31299L1299LttAttG11B.290.003509
ORF1ab/nsp31299L1299LttAttG11B.390.002331
ORF1ab/nsp31299L1299LTtaCta11B.400.000364
ORF1ab/nsp31299L1299LttAttG11C.20.016129
ORF1ab/nsp31299L1299LttAttG11C.36.30.000567
ORF1ab/nsp31299L1299LttAttG11D.20.000075
ORF1ab/nsp31299L1299LttAttG11P.1.150.000232
ORF1ab/nsp31299L1299LttAttG11P.1.70.000319
ORF1ab/nsp31299L1299LttAttG11Q.30.000145