CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1287F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31287L1287FL2105FnonsynCttTtt3267326716578-6580

Details of the mutation L1287F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31287L1287FCttTtt32673267All0.000625
ORF1ab/nsp31287L1287FCttTtt11141114B.1.1.70.000997
ORF1ab/nsp31287L1287FCttTtt470470AY.410.138154
ORF1ab/nsp31287L1287FCttTtt231231AY.430.001023
ORF1ab/nsp31287L1287FCttTtt190190B.1.617.20.000715
ORF1ab/nsp31287L1287FCttTtt174174B.1.1.2050.64684
ORF1ab/nsp31287L1287FCttTtt164164AY.40.000255
ORF1ab/nsp31287L1287FCttTtt8181AY.440.000493
ORF1ab/nsp31287L1287FCttTtt7979B.1.4220.064175
ORF1ab/nsp31287L1287FCttTtt6969B.10.000632
ORF1ab/nsp31287L1287FCttTtt6666AY.4.20.001431
ORF1ab/nsp31287L1287FCttTtt4343AY.30.000428
ORF1ab/nsp31287L1287FCttTtt3333AY.520.026873
ORF1ab/nsp31287L1287FCttTtt3232AY.99.20.002949
ORF1ab/nsp31287L1287FCttTtt3131AY.610.003248
ORF1ab/nsp31287L1287FCttTtt2828B.1.20.000247
ORF1ab/nsp31287L1287FCttTtt2525AY.1020.000663
ORF1ab/nsp31287L1287FCttTtt2525AY.1030.000155
ORF1ab/nsp31287L1287FCttTtt2424B.1.5960.002091
ORF1ab/nsp31287L1287FCttTtt1919AY.230.001325
ORF1ab/nsp31287L1287FCttTtt1616AY.1100.001803
ORF1ab/nsp31287L1287FCttTtt1616P.10.000252
ORF1ab/nsp31287L1287FCttTtt1515AY.920.004309
ORF1ab/nsp31287L1287FCttTtt1414B.1.10.000254
ORF1ab/nsp31287L1287FCttTtt1212B.1.4290.000282
ORF1ab/nsp31287L1287FCttTtt1111B.1.1.5190.000437
ORF1ab/nsp31287L1287FCttTtt1111B.1.1770.000145
ORF1ab/nsp31287L1287FCttTtt1010B.1.1.3120.01912
ORF1ab/nsp31287L1287FCttTtt99AY.250.000054
ORF1ab/nsp31287L1287FCttTtt88AY.330.000534
ORF1ab/nsp31287L1287FCttTtt88B.1.1600.00025
ORF1ab/nsp31287L1287FCttTtt88B.1.36.220.009662
ORF1ab/nsp31287L1287FCttTtt88B.1.4620.057971
ORF1ab/nsp31287L1287FCttTtt77C.370.000812
ORF1ab/nsp31287L1287FCttTtt66AY.1170.000507
ORF1ab/nsp31287L1287FCttTtt66AY.390.000148
ORF1ab/nsp31287L1287FCttTtt66B.1.5650.004862
ORF1ab/nsp31287L1287FCttTtt55AY.1200.000186
ORF1ab/nsp31287L1287FCttTtt55AY.39.10.000198
ORF1ab/nsp31287L1287FCttTtt55AY.470.000156
ORF1ab/nsp31287L1287FCttTtt55AY.620.002179
ORF1ab/nsp31287L1287FCttTtt55B.1.2580.000333
ORF1ab/nsp31287L1287FCttTtt55B.1.258.170.00052
ORF1ab/nsp31287L1287FCttTtt55B.1.3510.000149
ORF1ab/nsp31287L1287FCttTtt55B.1.5260.000118
ORF1ab/nsp31287L1287FCttTtt44AY.290.000063
ORF1ab/nsp31287L1287FCttTtt44AY.50.000083
ORF1ab/nsp31287L1287FCttTtt44AY.680.001095
ORF1ab/nsp31287L1287FCttTtt44AY.98.10.000194
ORF1ab/nsp31287L1287FCttTtt44B.1.1.2200.007435
ORF1ab/nsp31287L1287FCttTtt44B.1.36.170.001976
ORF1ab/nsp31287L1287FCttTtt44P.1.140.000191
ORF1ab/nsp31287L1287FCttTtt44P.20.000747
ORF1ab/nsp31287L1287FCttTtt44Q.40.001819
ORF1ab/nsp31287L1287FCttTtt33AY.1160.00086
ORF1ab/nsp31287L1287FCttTtt33AY.160.001139
ORF1ab/nsp31287L1287FCttTtt33AY.60.000123
ORF1ab/nsp31287L1287FCttTtt33AY.840.001312
ORF1ab/nsp31287L1287FCttTtt33B.1.1.2160.002671
ORF1ab/nsp31287L1287FCttTtt33B.1.1.3800.029412
ORF1ab/nsp31287L1287FCttTtt33B.1.2430.000209
ORF1ab/nsp31287L1287FCttTtt33B.1.617.10.000387
ORF1ab/nsp31287L1287FCttTtt33C.360.002732
ORF1ab/nsp31287L1287FCttTtt33P.1.150.000697
ORF1ab/nsp31287L1287FCttTtt22AY.1010.000981
ORF1ab/nsp31287L1287FCttTtt22AY.1190.000071
ORF1ab/nsp31287L1287FCttTtt22AY.200.000078
ORF1ab/nsp31287L1287FCttTtt22AY.450.000243
ORF1ab/nsp31287L1287FCttTtt22AY.460.000208
ORF1ab/nsp31287L1287FCttTtt22AY.46.20.001271
ORF1ab/nsp31287L1287FCttTtt22AY.46.60.000144
ORF1ab/nsp31287L1287FCttTtt22AY.5.30.000675
ORF1ab/nsp31287L1287FCttTtt22AY.70.000392
ORF1ab/nsp31287L1287FCttTtt22AY.9.20.000073
ORF1ab/nsp31287L1287FCttTtt22B.1.1.2840.000215
ORF1ab/nsp31287L1287FCttTtt22B.1.1.700.000682
ORF1ab/nsp31287L1287FCttTtt22B.1.177.520.003515
ORF1ab/nsp31287L1287FCttTtt22B.1.177.600.000437
ORF1ab/nsp31287L1287FCttTtt22B.1.466.20.000782
ORF1ab/nsp31287L1287FCttTtt22B.1.6090.000959
ORF1ab/nsp31287L1287FCttTtt22B.1.6210.000177
ORF1ab/nsp31287L1287FCttTtt11A.20.000662
ORF1ab/nsp31287L1287FCttTtt11A.23.10.000704
ORF1ab/nsp31287L1287FCttTtt11AY.1000.000046
ORF1ab/nsp31287L1287FCttTtt11AY.1130.000142
ORF1ab/nsp31287L1287FCttTtt11AY.1180.000063
ORF1ab/nsp31287L1287FCttTtt11AY.120.000316
ORF1ab/nsp31287L1287FCttTtt11AY.210.001898
ORF1ab/nsp31287L1287FCttTtt11AY.3.10.000085
ORF1ab/nsp31287L1287FCttTtt11AY.300.000396
ORF1ab/nsp31287L1287FCttTtt11AY.4.50.000107
ORF1ab/nsp31287L1287FCttTtt11AY.420.00004
ORF1ab/nsp31287L1287FCttTtt11AY.46.10.001027
ORF1ab/nsp31287L1287FCttTtt11AY.46.40.000165
ORF1ab/nsp31287L1287FCttTtt11AY.5.40.000277
ORF1ab/nsp31287L1287FCttTtt11AY.590.00053
ORF1ab/nsp31287L1287FCttTtt11AY.7.10.000113
ORF1ab/nsp31287L1287FCttTtt11AY.7.20.000559
ORF1ab/nsp31287L1287FCttTtt11AY.870.000833
ORF1ab/nsp31287L1287FCttTtt11AY.890.004902
ORF1ab/nsp31287L1287FCttTtt11AY.9.10.000084
ORF1ab/nsp31287L1287FCttTtt11AY.930.000273
ORF1ab/nsp31287L1287FCttTtt11AY.950.000761
ORF1ab/nsp31287L1287FCttTtt11AY.99.10.001553
ORF1ab/nsp31287L1287FCttTtt11B.1.1.2220.000204
ORF1ab/nsp31287L1287FCttTtt11B.1.1.280.000311
ORF1ab/nsp31287L1287FCttTtt11B.1.1.2940.001266
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3020.002075
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3050.003861
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3060.000438
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3180.000302
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3480.000796
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3720.000689
ORF1ab/nsp31287L1287FCttTtt11B.1.1.390.00051
ORF1ab/nsp31287L1287FCttTtt11B.1.1.3980.003226
ORF1ab/nsp31287L1287FCttTtt11B.1.1.4090.002833
ORF1ab/nsp31287L1287FCttTtt11B.1.1.4320.001266
ORF1ab/nsp31287L1287FCttTtt11B.1.1.4340.000349
ORF1ab/nsp31287L1287FCttTtt11B.1.1.5230.001563
ORF1ab/nsp31287L1287FCttTtt11B.1.1390.000733
ORF1ab/nsp31287L1287FCttTtt11B.1.177.330.001645
ORF1ab/nsp31287L1287FCttTtt11B.1.177.40.000211
ORF1ab/nsp31287L1287FCttTtt11B.1.2210.000071
ORF1ab/nsp31287L1287FCttTtt11B.1.2340.000132
ORF1ab/nsp31287L1287FCttTtt11B.1.2790.000514
ORF1ab/nsp31287L1287FCttTtt11B.1.2980.002114
ORF1ab/nsp31287L1287FCttTtt11B.1.3110.000275
ORF1ab/nsp31287L1287FCttTtt11B.1.351.30.000876
ORF1ab/nsp31287L1287FCttTtt11B.1.416.10.001563
ORF1ab/nsp31287L1287FCttTtt11B.1.4270.00005
ORF1ab/nsp31287L1287FCttTtt11B.1.4990.00105
ORF1ab/nsp31287L1287FCttTtt11B.1.5810.009434
ORF1ab/nsp31287L1287FCttTtt11D.20.000075
ORF1ab/nsp31287L1287FCttTtt11N.50.001767
ORF1ab/nsp31287L1287FCttTtt11P.1.120.000484
ORF1ab/nsp31287L1287FCttTtt11P.1.20.001156
ORF1ab/nsp31287L1287FCttTtt11P.1.80.004785
ORF1ab/nsp31287L1287FCttTtt11P.30.001595
ORF1ab/nsp31287L1287FCttTtt11Q.80.000165