CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1277L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31277L1277LL2095LsynCtaTta182216500.9055986548-6550
ORF1ab/nsp31277L1277LL2095LsynctActG18221490.08177836548-6550
ORF1ab/nsp31277L1277LL2095LsynctActC1822170.009330416548-6550
ORF1ab/nsp31277L1277LL2095LsynctActT182260.003293086548-6550

Details of the mutation L1277L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31277L1277LCtaTta16501822All0.000316
ORF1ab/nsp31277L1277LctActG1491822All0.000028
ORF1ab/nsp31277L1277LctActC171822All0.000003
ORF1ab/nsp31277L1277LctActT61822All0.000001
ORF1ab/nsp31277L1277LCtaTta390466B.1.1.70.000349
ORF1ab/nsp31277L1277LctActG75466B.1.1.70.000067
ORF1ab/nsp31277L1277LctActT1466B.1.1.70.000001
ORF1ab/nsp31277L1277LCtaTta190202AY.40.000296
ORF1ab/nsp31277L1277LctActG12202AY.40.000019
ORF1ab/nsp31277L1277LCtaTta9495P.10.001481
ORF1ab/nsp31277L1277LctActG195P.10.000016
ORF1ab/nsp31277L1277LCtaTta8787AY.230.006068
ORF1ab/nsp31277L1277LCtaTta6668AY.430.000292
ORF1ab/nsp31277L1277LctActT168AY.430.000004
ORF1ab/nsp31277L1277LctActG168AY.430.000004
ORF1ab/nsp31277L1277LCtaTta5960AY.1020.001564
ORF1ab/nsp31277L1277LctActG160AY.1020.000027
ORF1ab/nsp31277L1277LCtaTta5358B.1.617.20.0002
ORF1ab/nsp31277L1277LctActG458B.1.617.20.000015
ORF1ab/nsp31277L1277LctActT158B.1.617.20.000004
ORF1ab/nsp31277L1277LCtaTta5456AY.250.000325
ORF1ab/nsp31277L1277LctActG256AY.250.000012
ORF1ab/nsp31277L1277LCtaTta5355B.1.20.000467
ORF1ab/nsp31277L1277LctActG255B.1.20.000018
ORF1ab/nsp31277L1277LCtaTta4343B.1.2210.003054
ORF1ab/nsp31277L1277LCtaTta4040B.1.1600.001248
ORF1ab/nsp31277L1277LCtaTta2829AY.440.00017
ORF1ab/nsp31277L1277LctActC129AY.440.000006
ORF1ab/nsp31277L1277LCtaTta2929B.1.5940.90625
ORF1ab/nsp31277L1277LCtaTta2727B.1.1.3070.068354
ORF1ab/nsp31277L1277LctActG1623AY.30.000159
ORF1ab/nsp31277L1277LCtaTta723AY.30.00007
ORF1ab/nsp31277L1277LCtaTta2223B.1.10.000399
ORF1ab/nsp31277L1277LctActC123B.1.10.000018
ORF1ab/nsp31277L1277LCtaTta2222A.2.5.20.034591
ORF1ab/nsp31277L1277LCtaTta1922B.10.000174
ORF1ab/nsp31277L1277LctActC122B.10.000009
ORF1ab/nsp31277L1277LctActG122B.10.000009
ORF1ab/nsp31277L1277LctActT122B.10.000009
ORF1ab/nsp31277L1277LCtaTta2020AY.470.000622
ORF1ab/nsp31277L1277LCtaTta2020B.1.177.40.004221
ORF1ab/nsp31277L1277LCtaTta2020B.1.4290.000471
ORF1ab/nsp31277L1277LCtaTta1718AY.3.10.001449
ORF1ab/nsp31277L1277LctActG118AY.3.10.000085
ORF1ab/nsp31277L1277LCtaTta1718AY.46.60.001228
ORF1ab/nsp31277L1277LctActC118AY.46.60.000072
ORF1ab/nsp31277L1277LCtaTta1717AY.1110.003114
ORF1ab/nsp31277L1277LCtaTta1215AY.1030.000075
ORF1ab/nsp31277L1277LctActG315AY.1030.000019
ORF1ab/nsp31277L1277LCtaTta1213B.1.1770.000158
ORF1ab/nsp31277L1277LctActC113B.1.1770.000013
ORF1ab/nsp31277L1277LctActG1112AY.450.001339
ORF1ab/nsp31277L1277LCtaTta112AY.450.000122
ORF1ab/nsp31277L1277LCtaTta1212B.1.4270.000606
ORF1ab/nsp31277L1277LCtaTta1011B.1.3510.000297
ORF1ab/nsp31277L1277LctActG111B.1.3510.00003
ORF1ab/nsp31277L1277LCtaTta710B.1.5260.000165
ORF1ab/nsp31277L1277LctActG310B.1.5260.000071
ORF1ab/nsp31277L1277LCtaTta99AY.290.000142
ORF1ab/nsp31277L1277LctActG88B.1.1.2770.00607
ORF1ab/nsp31277L1277LCtaTta77AY.260.000198
ORF1ab/nsp31277L1277LCtaTta77AY.390.000173
ORF1ab/nsp31277L1277LCtaTta57AY.50.000103
ORF1ab/nsp31277L1277LctActC27AY.50.000041
ORF1ab/nsp31277L1277LCtaTta66B.1.1.2220.001224
ORF1ab/nsp31277L1277LCtaTta66B.1.351.30.005259
ORF1ab/nsp31277L1277LCtaTta55AY.140.00044
ORF1ab/nsp31277L1277LCtaTta55AY.4.20.000108
ORF1ab/nsp31277L1277LCtaTta55AY.610.000524
ORF1ab/nsp31277L1277LCtaTta55B.1.1.2630.007788
ORF1ab/nsp31277L1277LCtaTta44AY.16.10.00188
ORF1ab/nsp31277L1277LCtaTta44AY.330.000267
ORF1ab/nsp31277L1277LCtaTta44AY.360.000593
ORF1ab/nsp31277L1277LCtaTta44AY.46.40.000658
ORF1ab/nsp31277L1277LCtaTta44AY.60.000165
ORF1ab/nsp31277L1277LctActC44B.1.1.460.017467
ORF1ab/nsp31277L1277LCtaTta44B.1.6210.000354
ORF1ab/nsp31277L1277LCtaTta44C.36.30.002269
ORF1ab/nsp31277L1277LCtaTta33A.280.007937
ORF1ab/nsp31277L1277LCtaTta33AY.1160.00086
ORF1ab/nsp31277L1277LCtaTta33AY.740.000347
ORF1ab/nsp31277L1277LCtaTta33AY.98.10.000145
ORF1ab/nsp31277L1277LCtaTta33B.1.1620.015075
ORF1ab/nsp31277L1277LCtaTta33B.1.36.10.003421
ORF1ab/nsp31277L1277LCtaTta33B.1.3710.003367
ORF1ab/nsp31277L1277LCtaTta33B.1.4460.06
ORF1ab/nsp31277L1277LctActG33B.1.6090.001438
ORF1ab/nsp31277L1277LCtaTta33P.1.140.000143
ORF1ab/nsp31277L1277LCtaTta22A.2.50.000998
ORF1ab/nsp31277L1277LCtaTta22AY.1000.000092
ORF1ab/nsp31277L1277LCtaTta22AY.1170.000169
ORF1ab/nsp31277L1277LCtaTta22AY.1200.000074
ORF1ab/nsp31277L1277LCtaTta22AY.300.000791
ORF1ab/nsp31277L1277LCtaTta22AY.380.000999
ORF1ab/nsp31277L1277LCtaTta22AY.39.10.000079
ORF1ab/nsp31277L1277LCtaTta22AY.530.000575
ORF1ab/nsp31277L1277LCtaTta22AY.620.000871
ORF1ab/nsp31277L1277LCtaTta22AY.660.002139
ORF1ab/nsp31277L1277LCtaTta22AY.7.10.000225
ORF1ab/nsp31277L1277LCtaTta22AY.790.002421
ORF1ab/nsp31277L1277LCtaTta12AY.840.000437
ORF1ab/nsp31277L1277LctActC12AY.840.000437
ORF1ab/nsp31277L1277LctActC12AY.9.20.000037
ORF1ab/nsp31277L1277LCtaTta12AY.9.20.000037
ORF1ab/nsp31277L1277LCtaTta22B0.000256
ORF1ab/nsp31277L1277LCtaTta22B.1.160.280.005848
ORF1ab/nsp31277L1277LCtaTta22B.1.2340.000264
ORF1ab/nsp31277L1277LCtaTta22B.1.2430.000139
ORF1ab/nsp31277L1277LCtaTta12R.10.00009
ORF1ab/nsp31277L1277LctActG12R.10.00009
ORF1ab/nsp31277L1277LCtaTta11AE.80.000489
ORF1ab/nsp31277L1277LCtaTta11AY.100.00053
ORF1ab/nsp31277L1277LCtaTta11AY.1090.00074
ORF1ab/nsp31277L1277LCtaTta11AY.1190.000035
ORF1ab/nsp31277L1277LCtaTta11AY.1210.000135
ORF1ab/nsp31277L1277LCtaTta11AY.150.002222
ORF1ab/nsp31277L1277LctActG11AY.200.000039
ORF1ab/nsp31277L1277LCtaTta11AY.350.000233
ORF1ab/nsp31277L1277LCtaTta11AY.370.000316
ORF1ab/nsp31277L1277LctActG11AY.39.20.001541
ORF1ab/nsp31277L1277LCtaTta11AY.420.00004
ORF1ab/nsp31277L1277LCtaTta11AY.500.000799
ORF1ab/nsp31277L1277LCtaTta11AY.540.000095
ORF1ab/nsp31277L1277LCtaTta11AY.700.000209
ORF1ab/nsp31277L1277LCtaTta11AY.750.000056
ORF1ab/nsp31277L1277LCtaTta11AY.75.10.00018
ORF1ab/nsp31277L1277LCtaTta11AY.870.000833
ORF1ab/nsp31277L1277LCtaTta11AY.90.000068
ORF1ab/nsp31277L1277LCtaTta11AY.900.000684
ORF1ab/nsp31277L1277LCtaTta11AY.980.000079
ORF1ab/nsp31277L1277LCtaTta11AZ.10.000867
ORF1ab/nsp31277L1277LCtaTta11B.1.1.10.000327
ORF1ab/nsp31277L1277LCtaTta11B.1.1.1530.001095
ORF1ab/nsp31277L1277LctActG11B.1.1.2140.000055
ORF1ab/nsp31277L1277LCtaTta11B.1.1.2410.00207
ORF1ab/nsp31277L1277LCtaTta11B.1.1.250.000569
ORF1ab/nsp31277L1277LCtaTta11B.1.1.280.000311
ORF1ab/nsp31277L1277LctActC11B.1.1.3000.010753
ORF1ab/nsp31277L1277LCtaTta11B.1.1.3180.000302
ORF1ab/nsp31277L1277LctActC11B.1.1.370.000193
ORF1ab/nsp31277L1277LCtaTta11B.1.1.3720.000689
ORF1ab/nsp31277L1277LCtaTta11B.1.1.3970.002252
ORF1ab/nsp31277L1277LCtaTta11B.1.1.500.000679
ORF1ab/nsp31277L1277LCtaTta11B.1.1.5230.001563
ORF1ab/nsp31277L1277LCtaTta11B.1.1.700.000341
ORF1ab/nsp31277L1277LCtaTta11B.1.1470.000756
ORF1ab/nsp31277L1277LCtaTta11B.1.177.190.001431
ORF1ab/nsp31277L1277LCtaTta11B.1.177.440.000519
ORF1ab/nsp31277L1277LCtaTta11B.1.177.570.000281
ORF1ab/nsp31277L1277LctActC11B.1.177.60.000977
ORF1ab/nsp31277L1277LCtaTta11B.1.177.600.000218
ORF1ab/nsp31277L1277LCtaTta11B.1.177.820.000477
ORF1ab/nsp31277L1277LCtaTta11B.1.2400.000216
ORF1ab/nsp31277L1277LctActT11B.1.2580.000067
ORF1ab/nsp31277L1277LCtaTta11B.1.2770.02381
ORF1ab/nsp31277L1277LctActT11B.1.3200.001245
ORF1ab/nsp31277L1277LCtaTta11B.1.351.20.000303
ORF1ab/nsp31277L1277LCtaTta11B.1.360.000146
ORF1ab/nsp31277L1277LCtaTta11B.1.36.290.000517
ORF1ab/nsp31277L1277LCtaTta11B.1.3960.000706
ORF1ab/nsp31277L1277LCtaTta11B.1.4010.008197
ORF1ab/nsp31277L1277LCtaTta11B.1.466.20.000391
ORF1ab/nsp31277L1277LctActC11B.1.5610.000397
ORF1ab/nsp31277L1277LCtaTta11B.1.5970.00463
ORF1ab/nsp31277L1277LCtaTta11B.1.6340.003425
ORF1ab/nsp31277L1277LCtaTta11B.1.6370.000073
ORF1ab/nsp31277L1277LCtaTta11B.1.930.000934
ORF1ab/nsp31277L1277LCtaTta11B.100.008264
ORF1ab/nsp31277L1277LCtaTta11P.1.150.000232
ORF1ab/nsp31277L1277LCtaTta11P.1.170.000162
ORF1ab/nsp31277L1277LCtaTta11P.50.013699