CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1259L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31259L1259LL2077LsynctTctC9559420.9863876494-6496
ORF1ab/nsp31259L1259LL2077LsynctTctA955120.01256546494-6496
ORF1ab/nsp31259L1259LL2077LsynctTctG95510.001047126494-6496

Details of the mutation L1259L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31259L1259LctTctC942955All0.00018
ORF1ab/nsp31259L1259LctTctA12955All0.000002
ORF1ab/nsp31259L1259LctTctG1955All0
ORF1ab/nsp31259L1259LctTctC851851AY.660.91016
ORF1ab/nsp31259L1259LctTctC3838B.1.1.70.000034
ORF1ab/nsp31259L1259LctTctC1212AY.540.001144
ORF1ab/nsp31259L1259LctTctC55AY.40.000008
ORF1ab/nsp31259L1259LctTctC55B.1.4530.016181
ORF1ab/nsp31259L1259LctTctC55B.1.617.20.000019
ORF1ab/nsp31259L1259LctTctC44AY.430.000018
ORF1ab/nsp31259L1259LctTctC24B.1.10.000036
ORF1ab/nsp31259L1259LctTctA24B.1.10.000036
ORF1ab/nsp31259L1259LctTctC33AY.130.000483
ORF1ab/nsp31259L1259LctTctC33AY.30.00003
ORF1ab/nsp31259L1259LctTctA12B.10.000009
ORF1ab/nsp31259L1259LctTctC12B.10.000009
ORF1ab/nsp31259L1259LctTctA22B.1.20.000018
ORF1ab/nsp31259L1259LctTctA22D.20.00015
ORF1ab/nsp31259L1259LctTctG110.055556
ORF1ab/nsp31259L1259LctTctA11A.2.20.001689
ORF1ab/nsp31259L1259LctTctC11AY.260.000028
ORF1ab/nsp31259L1259LctTctA11AY.3.10.000085
ORF1ab/nsp31259L1259LctTctC11AY.4.20.000022
ORF1ab/nsp31259L1259LctTctC11AY.440.000006
ORF1ab/nsp31259L1259LctTctC11AY.470.000031
ORF1ab/nsp31259L1259LctTctC11AY.530.000288
ORF1ab/nsp31259L1259LctTctA11B.1.1600.000031
ORF1ab/nsp31259L1259LctTctC11B.1.1770.000013
ORF1ab/nsp31259L1259LctTctA11B.1.177.440.000519
ORF1ab/nsp31259L1259LctTctC11B.1.2140.003663
ORF1ab/nsp31259L1259LctTctC11B.1.2580.000067
ORF1ab/nsp31259L1259LctTctC11B.1.4290.000024
ORF1ab/nsp31259L1259LctTctC11B.1.5680.001111
ORF1ab/nsp31259L1259LctTctA11B.1.5760.000907
ORF1ab/nsp31259L1259LctTctC11B.1.5770.000687
ORF1ab/nsp31259L1259LctTctC11B.1.619.10.000641
ORF1ab/nsp31259L1259LctTctC11C.370.000116