CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = L1226L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31226L1226LL2044LsynCtaTta408539990.9789476395-6397
ORF1ab/nsp31226L1226LL2044LsynctActT4085500.01223996395-6397
ORF1ab/nsp31226L1226LL2044LsynctActG4085280.006854356395-6397
ORF1ab/nsp31226L1226LL2044LsynctActC408580.001958386395-6397

Details of the mutation L1226L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31226L1226LCtaTta39994085All0.000765
ORF1ab/nsp31226L1226LctActT504085All0.00001
ORF1ab/nsp31226L1226LctActG284085All0.000005
ORF1ab/nsp31226L1226LctActC84085All0.000002
ORF1ab/nsp31226L1226LCtaTta741758AY.40.001153
ORF1ab/nsp31226L1226LctActT14758AY.40.000022
ORF1ab/nsp31226L1226LctActG3758AY.40.000005
ORF1ab/nsp31226L1226LCtaTta622622Q.10.078575
ORF1ab/nsp31226L1226LCtaTta611616B.1.1.70.000547
ORF1ab/nsp31226L1226LctActT3616B.1.1.70.000003
ORF1ab/nsp31226L1226LctActG2616B.1.1.70.000002
ORF1ab/nsp31226L1226LCtaTta438438AY.250.002634
ORF1ab/nsp31226L1226LCtaTta326326B.1.1.40.970238
ORF1ab/nsp31226L1226LCtaTta131132B.1.20.001154
ORF1ab/nsp31226L1226LctActG1132B.1.20.000009
ORF1ab/nsp31226L1226LCtaTta8488B.1.617.20.000316
ORF1ab/nsp31226L1226LctActT288B.1.617.20.000008
ORF1ab/nsp31226L1226LctActG288B.1.617.20.000008
ORF1ab/nsp31226L1226LCtaTta7374AY.430.000323
ORF1ab/nsp31226L1226LctActG174AY.430.000004
ORF1ab/nsp31226L1226LCtaTta7272AY.440.000438
ORF1ab/nsp31226L1226LCtaTta6565AY.30.000647
ORF1ab/nsp31226L1226LCtaTta6364B.10.000577
ORF1ab/nsp31226L1226LctActG164B.10.000009
ORF1ab/nsp31226L1226LCtaTta6060AY.420.002414
ORF1ab/nsp31226L1226LCtaTta5252B.1.1.4671
ORF1ab/nsp31226L1226LCtaTta4444AY.390.001087
ORF1ab/nsp31226L1226LCtaTta4344B.1.10.00078
ORF1ab/nsp31226L1226LctActG144B.1.10.000018
ORF1ab/nsp31226L1226LCtaTta4040B.1.177.620.047676
ORF1ab/nsp31226L1226LCtaTta3636B.1.258.170.003743
ORF1ab/nsp31226L1226LCtaTta2828AY.98.10.001356
ORF1ab/nsp31226L1226LCtaTta2727AC.11
ORF1ab/nsp31226L1226LCtaTta2525B.1.2650.031766
ORF1ab/nsp31226L1226LCtaTta2323AY.750.001289
ORF1ab/nsp31226L1226LCtaTta2121B.1.2210.001492
ORF1ab/nsp31226L1226LctActT1920C.360.017304
ORF1ab/nsp31226L1226LCtaTta120C.360.000911
ORF1ab/nsp31226L1226LCtaTta1616B.1.4090.0125
ORF1ab/nsp31226L1226LCtaTta1414P.10.000221
ORF1ab/nsp31226L1226LCtaTta1213AY.1020.000318
ORF1ab/nsp31226L1226LctActG113AY.1020.000027
ORF1ab/nsp31226L1226LCtaTta1313AY.1030.000081
ORF1ab/nsp31226L1226LCtaTta1313AY.290.000205
ORF1ab/nsp31226L1226LCtaTta1012AY.1200.000372
ORF1ab/nsp31226L1226LctActT212AY.1200.000074
ORF1ab/nsp31226L1226LCtaTta612B.1.1600.000187
ORF1ab/nsp31226L1226LctActG612B.1.1600.000187
ORF1ab/nsp31226L1226LCtaTta1011B.1.3510.000297
ORF1ab/nsp31226L1226LctActT111B.1.3510.00003
ORF1ab/nsp31226L1226LCtaTta1011D.20.00075
ORF1ab/nsp31226L1226LctActC111D.20.000075
ORF1ab/nsp31226L1226LCtaTta1010B.1.1.4050.833333
ORF1ab/nsp31226L1226LCtaTta1010B.1.1770.000132
ORF1ab/nsp31226L1226LCtaTta1010B.1.4290.000235
ORF1ab/nsp31226L1226LCtaTta99AY.260.000255
ORF1ab/nsp31226L1226LCtaTta78B.1.1.5190.000278
ORF1ab/nsp31226L1226LctActG18B.1.1.5190.00004
ORF1ab/nsp31226L1226LCtaTta77B.1.3240.011236
ORF1ab/nsp31226L1226LCtaTta77B.1.4270.000353
ORF1ab/nsp31226L1226LctActG47P.1.140.000191
ORF1ab/nsp31226L1226LCtaTta37P.1.140.000143
ORF1ab/nsp31226L1226LctActT66AY.490.019169
ORF1ab/nsp31226L1226LCtaTta55AY.1190.000177
ORF1ab/nsp31226L1226LCtaTta55P.1.160.001871
ORF1ab/nsp31226L1226LCtaTta44AY.1210.000541
ORF1ab/nsp31226L1226LCtaTta44AY.200.000155
ORF1ab/nsp31226L1226LCtaTta44AY.450.000487
ORF1ab/nsp31226L1226LCtaTta44AY.46.50.000794
ORF1ab/nsp31226L1226LCtaTta44AY.470.000124
ORF1ab/nsp31226L1226LCtaTta44AY.50.000083
ORF1ab/nsp31226L1226LCtaTta44B.1.1.3060.001754
ORF1ab/nsp31226L1226LCtaTta44B.1.177.820.001909
ORF1ab/nsp31226L1226LctActC44B.6.40.181818
ORF1ab/nsp31226L1226LCtaTta44C.370.000464
ORF1ab/nsp31226L1226LCtaTta44Q.40.001819
ORF1ab/nsp31226L1226LCtaTta44Q.80.00066
ORF1ab/nsp31226L1226LCtaTta33AY.1000.000138
ORF1ab/nsp31226L1226LCtaTta33AY.4.50.000322
ORF1ab/nsp31226L1226LCtaTta33AY.46.30.002801
ORF1ab/nsp31226L1226LctActG33AY.5.40.00083
ORF1ab/nsp31226L1226LCtaTta33AY.740.000347
ORF1ab/nsp31226L1226LCtaTta33B0.000383
ORF1ab/nsp31226L1226LCtaTta33B.1.1.1920.006928
ORF1ab/nsp31226L1226LCtaTta23B.1.1.2140.000111
ORF1ab/nsp31226L1226LctActG13B.1.1.2140.000055
ORF1ab/nsp31226L1226LCtaTta33B.1.1.2220.000612
ORF1ab/nsp31226L1226LCtaTta33B.1.1.3110.001074
ORF1ab/nsp31226L1226LCtaTta33B.1.1.370.000579
ORF1ab/nsp31226L1226LCtaTta33B.1.3990.005803
ORF1ab/nsp31226L1226LCtaTta33B.1.5250.000339
ORF1ab/nsp31226L1226LCtaTta33B.400.001093
ORF1ab/nsp31226L1226LCtaTta33P.1.10.000953
ORF1ab/nsp31226L1226LCtaTta33P.1.150.000697
ORF1ab/nsp31226L1226LCtaTta22A.23.10.001408
ORF1ab/nsp31226L1226LCtaTta22AY.116.10.000623
ORF1ab/nsp31226L1226LCtaTta12AY.1170.000085
ORF1ab/nsp31226L1226LctActT12AY.1170.000085
ORF1ab/nsp31226L1226LCtaTta22AY.240.000862
ORF1ab/nsp31226L1226LCtaTta22AY.460.000208
ORF1ab/nsp31226L1226LCtaTta22AY.520.001629
ORF1ab/nsp31226L1226LCtaTta22AY.530.000575
ORF1ab/nsp31226L1226LctActT12AY.75.10.00018
ORF1ab/nsp31226L1226LCtaTta12AY.75.10.00018
ORF1ab/nsp31226L1226LCtaTta22B.1.1.4090.005666
ORF1ab/nsp31226L1226LCtaTta22B.1.1.4170.005405
ORF1ab/nsp31226L1226LCtaTta22B.1.177.730.001133
ORF1ab/nsp31226L1226LCtaTta22B.1.2120.033333
ORF1ab/nsp31226L1226LCtaTta22B.1.2370.00995
ORF1ab/nsp31226L1226LCtaTta22B.1.2580.000133
ORF1ab/nsp31226L1226LCtaTta22B.1.3110.000549
ORF1ab/nsp31226L1226LCtaTta22B.1.360.000292
ORF1ab/nsp31226L1226LCtaTta22B.1.4800.004975
ORF1ab/nsp31226L1226LctActC22B.1.5750.000607
ORF1ab/nsp31226L1226LctActC12B.1.5760.000907
ORF1ab/nsp31226L1226LCtaTta12B.1.5760.000907
ORF1ab/nsp31226L1226LCtaTta22B.1.5960.000174
ORF1ab/nsp31226L1226LCtaTta22B.1.6370.000146
ORF1ab/nsp31226L1226LCtaTta22L.30.007092
ORF1ab/nsp31226L1226LctActT110.055556
ORF1ab/nsp31226L1226LCtaTta11A0.000387
ORF1ab/nsp31226L1226LCtaTta11AE.30.032258
ORF1ab/nsp31226L1226LCtaTta11AY.100.00053
ORF1ab/nsp31226L1226LCtaTta11AY.1010.00049
ORF1ab/nsp31226L1226LCtaTta11AY.1040.001984
ORF1ab/nsp31226L1226LCtaTta11AY.1080.001103
ORF1ab/nsp31226L1226LCtaTta11AY.1100.000113
ORF1ab/nsp31226L1226LCtaTta11AY.1130.000142
ORF1ab/nsp31226L1226LCtaTta11AY.1140.000231
ORF1ab/nsp31226L1226LCtaTta11AY.1160.000287
ORF1ab/nsp31226L1226LCtaTta11AY.1180.000063
ORF1ab/nsp31226L1226LCtaTta11AY.190.00114
ORF1ab/nsp31226L1226LCtaTta11AY.230.00007
ORF1ab/nsp31226L1226LCtaTta11AY.3.10.000085
ORF1ab/nsp31226L1226LCtaTta11AY.330.000067
ORF1ab/nsp31226L1226LCtaTta11AY.340.000097
ORF1ab/nsp31226L1226LCtaTta11AY.350.000233
ORF1ab/nsp31226L1226LCtaTta11AY.4.20.000022
ORF1ab/nsp31226L1226LCtaTta11AY.4.2.10.000149
ORF1ab/nsp31226L1226LCtaTta11AY.540.000095
ORF1ab/nsp31226L1226LCtaTta11AY.60.000041
ORF1ab/nsp31226L1226LCtaTta11AY.620.000436
ORF1ab/nsp31226L1226LCtaTta11AY.650.000533
ORF1ab/nsp31226L1226LctActG11AY.7.20.000559
ORF1ab/nsp31226L1226LCtaTta11AY.840.000437
ORF1ab/nsp31226L1226LCtaTta11AY.870.000833
ORF1ab/nsp31226L1226LCtaTta11AY.90.000068
ORF1ab/nsp31226L1226LCtaTta11AY.9.10.000084
ORF1ab/nsp31226L1226LCtaTta11AY.9.20.000037
ORF1ab/nsp31226L1226LCtaTta11AY.960.002075
ORF1ab/nsp31226L1226LCtaTta11AY.990.001049
ORF1ab/nsp31226L1226LCtaTta11AZ.40.003356
ORF1ab/nsp31226L1226LCtaTta11B.1.1.1320.014925
ORF1ab/nsp31226L1226LCtaTta11B.1.1.1700.001247
ORF1ab/nsp31226L1226LCtaTta11B.1.1.2070.001182
ORF1ab/nsp31226L1226LCtaTta11B.1.1.2200.001859
ORF1ab/nsp31226L1226LCtaTta11B.1.1.2530.002506
ORF1ab/nsp31226L1226LCtaTta11B.1.1.3170.000412
ORF1ab/nsp31226L1226LCtaTta11B.1.1.3690.000446
ORF1ab/nsp31226L1226LCtaTta11B.1.1.3910.008547
ORF1ab/nsp31226L1226LCtaTta11B.1.1.3980.003226
ORF1ab/nsp31226L1226LCtaTta11B.1.1.4340.000349
ORF1ab/nsp31226L1226LCtaTta11B.1.1.4640.001473
ORF1ab/nsp31226L1226LCtaTta11B.1.1.500.000679
ORF1ab/nsp31226L1226LCtaTta11B.1.1.700.000341
ORF1ab/nsp31226L1226LCtaTta11B.1.1390.000733
ORF1ab/nsp31226L1226LCtaTta11B.1.177.120.000152
ORF1ab/nsp31226L1226LCtaTta11B.1.177.790.002342
ORF1ab/nsp31226L1226LCtaTta11B.1.2180.005155
ORF1ab/nsp31226L1226LCtaTta11B.1.2230.002778
ORF1ab/nsp31226L1226LCtaTta11B.1.2430.00007
ORF1ab/nsp31226L1226LCtaTta11B.1.3010.005917
ORF1ab/nsp31226L1226LCtaTta11B.1.3050.002151
ORF1ab/nsp31226L1226LCtaTta11B.1.3190.003049
ORF1ab/nsp31226L1226LCtaTta11B.1.3200.001245
ORF1ab/nsp31226L1226LCtaTta11B.1.36.180.00042
ORF1ab/nsp31226L1226LCtaTta11B.1.36.290.000517
ORF1ab/nsp31226L1226LCtaTta11B.1.3960.000706
ORF1ab/nsp31226L1226LCtaTta11B.1.4040.001302
ORF1ab/nsp31226L1226LCtaTta11B.1.438.10.000107
ORF1ab/nsp31226L1226LCtaTta11B.1.4700.001404
ORF1ab/nsp31226L1226LCtaTta11B.1.5240.001406
ORF1ab/nsp31226L1226LCtaTta11B.1.5260.000024
ORF1ab/nsp31226L1226LCtaTta11B.1.619.10.000641
ORF1ab/nsp31226L1226LCtaTta11B.1.6230.000536
ORF1ab/nsp31226L1226LCtaTta11B.1.6270.00202
ORF1ab/nsp31226L1226LCtaTta11B.1.6280.000352
ORF1ab/nsp31226L1226LCtaTta11B.1.9.50.005682
ORF1ab/nsp31226L1226LCtaTta11B.4.10.018868
ORF1ab/nsp31226L1226LCtaTta11P.1.70.000319