CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = K1211N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31211K1211NK2029NnonsynaaGaaT519451560.9926846350-6352
ORF1ab/nsp31211K1211NK2029NnonsynaaGaaC5194380.007316136350-6352

Details of the mutation K1211N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31211K1211NaaGaaT51565194All0.000986
ORF1ab/nsp31211K1211NaaGaaC385194All0.000007
ORF1ab/nsp31211K1211NaaGaaT793793B.1.1.2770.601669
ORF1ab/nsp31211K1211NaaGaaT719721B.1.1.70.000644
ORF1ab/nsp31211K1211NaaGaaC2721B.1.1.70.000002
ORF1ab/nsp31211K1211NaaGaaT304308AY.430.001347
ORF1ab/nsp31211K1211NaaGaaC4308AY.430.000018
ORF1ab/nsp31211K1211NaaGaaT278284AY.40.000433
ORF1ab/nsp31211K1211NaaGaaC6284AY.40.000009
ORF1ab/nsp31211K1211NaaGaaT267270B.1.617.20.001005
ORF1ab/nsp31211K1211NaaGaaC3270B.1.617.20.000011
ORF1ab/nsp31211K1211NaaGaaT220220AY.1030.001366
ORF1ab/nsp31211K1211NaaGaaT156156B.1.4290.003671
ORF1ab/nsp31211K1211NaaGaaT148150AY.250.00089
ORF1ab/nsp31211K1211NaaGaaC2150AY.250.000012
ORF1ab/nsp31211K1211NaaGaaT135135AY.440.000822
ORF1ab/nsp31211K1211NaaGaaT128128B.1.20.001127
ORF1ab/nsp31211K1211NaaGaaT111111AY.200.004314
ORF1ab/nsp31211K1211NaaGaaT105105B.1.1.2630.163551
ORF1ab/nsp31211K1211NaaGaaT9697B.10.000879
ORF1ab/nsp31211K1211NaaGaaC197B.10.000009
ORF1ab/nsp31211K1211NaaGaaT8586AY.30.000845
ORF1ab/nsp31211K1211NaaGaaC186AY.30.00001
ORF1ab/nsp31211K1211NaaGaaT6565AY.1020.001723
ORF1ab/nsp31211K1211NaaGaaT6464AY.420.002575
ORF1ab/nsp31211K1211NaaGaaT6161P.10.000961
ORF1ab/nsp31211K1211NaaGaaT5657B.1.3510.001665
ORF1ab/nsp31211K1211NaaGaaC157B.1.3510.00003
ORF1ab/nsp31211K1211NaaGaaT5454B.1.36.310.094571
ORF1ab/nsp31211K1211NaaGaaT5353B.1.5260.001246
ORF1ab/nsp31211K1211NaaGaaT5252AY.710.024703
ORF1ab/nsp31211K1211NaaGaaT5050B.1.1.1760.021968
ORF1ab/nsp31211K1211NaaGaaT3942B.1.1.5190.001549
ORF1ab/nsp31211K1211NaaGaaC342B.1.1.5190.000119
ORF1ab/nsp31211K1211NaaGaaT4040B.1.10.000726
ORF1ab/nsp31211K1211NaaGaaT3838B.1.360.005544
ORF1ab/nsp31211K1211NaaGaaT3232B.1.1770.000421
ORF1ab/nsp31211K1211NaaGaaT2831B.1.1600.000873
ORF1ab/nsp31211K1211NaaGaaC331B.1.1600.000094
ORF1ab/nsp31211K1211NaaGaaT2929AY.98.10.001404
ORF1ab/nsp31211K1211NaaGaaT2828AY.4.20.000607
ORF1ab/nsp31211K1211NaaGaaT2626AY.1000.001196
ORF1ab/nsp31211K1211NaaGaaT2626AY.880.022989
ORF1ab/nsp31211K1211NaaGaaT2424AY.260.000679
ORF1ab/nsp31211K1211NaaGaaT2424B.1.2580.001597
ORF1ab/nsp31211K1211NaaGaaT2323AY.1110.004212
ORF1ab/nsp31211K1211NaaGaaT2323Q.10.002906
ORF1ab/nsp31211K1211NaaGaaT1920AY.390.00047
ORF1ab/nsp31211K1211NaaGaaC120AY.390.000025
ORF1ab/nsp31211K1211NaaGaaT1717AY.1190.0006
ORF1ab/nsp31211K1211NaaGaaT1616B.1.6210.001416
ORF1ab/nsp31211K1211NaaGaaT1515P.1.140.000717
ORF1ab/nsp31211K1211NaaGaaT1414AY.730.009315
ORF1ab/nsp31211K1211NaaGaaT1414B.1.1.2220.002856
ORF1ab/nsp31211K1211NaaGaaT1414B.1.5750.004248
ORF1ab/nsp31211K1211NaaGaaT1313B.1.1.2140.000721
ORF1ab/nsp31211K1211NaaGaaT1212AY.1210.001624
ORF1ab/nsp31211K1211NaaGaaT1111B.1.110.30.007902
ORF1ab/nsp31211K1211NaaGaaT1010AY.340.00097
ORF1ab/nsp31211K1211NaaGaaT1010AY.470.000311
ORF1ab/nsp31211K1211NaaGaaT1010AY.50.000206
ORF1ab/nsp31211K1211NaaGaaT1010P.20.001866
ORF1ab/nsp31211K1211NaaGaaT99AY.290.000142
ORF1ab/nsp31211K1211NaaGaaT89AY.330.000534
ORF1ab/nsp31211K1211NaaGaaC19AY.330.000067
ORF1ab/nsp31211K1211NaaGaaT99AY.610.000943
ORF1ab/nsp31211K1211NaaGaaT99B.1.1.2070.010638
ORF1ab/nsp31211K1211NaaGaaT99B.1.4270.000454
ORF1ab/nsp31211K1211NaaGaaT99B.1.5950.002349
ORF1ab/nsp31211K1211NaaGaaT88AH.30.030418
ORF1ab/nsp31211K1211NaaGaaT88AY.140.000704
ORF1ab/nsp31211K1211NaaGaaT78AY.480.003256
ORF1ab/nsp31211K1211NaaGaaC18AY.480.000465
ORF1ab/nsp31211K1211NaaGaaT88AY.9.10.00067
ORF1ab/nsp31211K1211NaaGaaT88AY.910.005844
ORF1ab/nsp31211K1211NaaGaaT88B.1.1.280.00249
ORF1ab/nsp31211K1211NaaGaaT88B.1.1.4580.333333
ORF1ab/nsp31211K1211NaaGaaT88B.1.36.80.008
ORF1ab/nsp31211K1211NaaGaaT88P.1.160.002993
ORF1ab/nsp31211K1211NaaGaaT47AY.230.000279
ORF1ab/nsp31211K1211NaaGaaC37AY.230.000209
ORF1ab/nsp31211K1211NaaGaaT77AY.3.10.000597
ORF1ab/nsp31211K1211NaaGaaT77AY.450.000852
ORF1ab/nsp31211K1211NaaGaaT77AY.720.009524
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.2910.005197
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.370.00135
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.5210.037433
ORF1ab/nsp31211K1211NaaGaaT77B.1.1110.008226
ORF1ab/nsp31211K1211NaaGaaT77B.1.177.440.003633
ORF1ab/nsp31211K1211NaaGaaT77B.1.2410.005682
ORF1ab/nsp31211K1211NaaGaaT77D.20.000525
ORF1ab/nsp31211K1211NaaGaaT66AY.1160.001721
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.3220.052632
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.3560.051282
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.4290.02765
ORF1ab/nsp31211K1211NaaGaaT66B.1.1040.02214
ORF1ab/nsp31211K1211NaaGaaT66B.1.2430.000418
ORF1ab/nsp31211K1211NaaGaaT66B.1.36.290.003104
ORF1ab/nsp31211K1211NaaGaaT66P.1.170.000971
ORF1ab/nsp31211K1211NaaGaaT55AY.1170.000423
ORF1ab/nsp31211K1211NaaGaaT55AY.1200.000186
ORF1ab/nsp31211K1211NaaGaaT55AY.460.00052
ORF1ab/nsp31211K1211NaaGaaT55AY.60.000206
ORF1ab/nsp31211K1211NaaGaaT55AZ.30.007599
ORF1ab/nsp31211K1211NaaGaaT55B.1.2210.000355
ORF1ab/nsp31211K1211NaaGaaT55B.1.6090.002397
ORF1ab/nsp31211K1211NaaGaaT55M.10.116279
ORF1ab/nsp31211K1211NaaGaaT44AY.1180.000251
ORF1ab/nsp31211K1211NaaGaaT34AY.270.000194
ORF1ab/nsp31211K1211NaaGaaC14AY.270.000065
ORF1ab/nsp31211K1211NaaGaaT44AY.280.007561
ORF1ab/nsp31211K1211NaaGaaT44AY.530.00115
ORF1ab/nsp31211K1211NaaGaaT44AY.980.000316
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.1530.004381
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.2310.012384
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3110.001433
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3180.001207
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3280.067797
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.4670.076923
ORF1ab/nsp31211K1211NaaGaaT44B.1.3110.001098
ORF1ab/nsp31211K1211NaaGaaT44B.1.5250.000453
ORF1ab/nsp31211K1211NaaGaaT44B.1.5540.017621
ORF1ab/nsp31211K1211NaaGaaT44B.1.6370.000292
ORF1ab/nsp31211K1211NaaGaaT44C.120.028777
ORF1ab/nsp31211K1211NaaGaaT33A0.001161
ORF1ab/nsp31211K1211NaaGaaT23AY.1100.000225
ORF1ab/nsp31211K1211NaaGaaC13AY.1100.000113
ORF1ab/nsp31211K1211NaaGaaT33AY.20.001068
ORF1ab/nsp31211K1211NaaGaaT33AY.360.000445
ORF1ab/nsp31211K1211NaaGaaT33AY.4.50.000322
ORF1ab/nsp31211K1211NaaGaaT33AY.46.60.000217
ORF1ab/nsp31211K1211NaaGaaT33AY.7.10.000338
ORF1ab/nsp31211K1211NaaGaaT33AY.750.000168
ORF1ab/nsp31211K1211NaaGaaT33AY.9.20.00011
ORF1ab/nsp31211K1211NaaGaaT33AY.940.001328
ORF1ab/nsp31211K1211NaaGaaT33AY.99.20.000276
ORF1ab/nsp31211K1211NaaGaaT33B0.000383
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.2980.002586
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.330.001263
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.4340.001046
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.630.001157
ORF1ab/nsp31211K1211NaaGaaT33B.1.120.024
ORF1ab/nsp31211K1211NaaGaaT33B.1.177.210.000229
ORF1ab/nsp31211K1211NaaGaaT33B.1.3260.022727
ORF1ab/nsp31211K1211NaaGaaT33B.1.5960.000261
ORF1ab/nsp31211K1211NaaGaaT33B.1.5990.010949
ORF1ab/nsp31211K1211NaaGaaT33B.1.617.10.000387
ORF1ab/nsp31211K1211NaaGaaT33C.350.002322
ORF1ab/nsp31211K1211NaaGaaT23Q.80.00033
ORF1ab/nsp31211K1211NaaGaaC13Q.80.000165
ORF1ab/nsp31211K1211NaaGaaT33R.10.00027
ORF1ab/nsp31211K1211NaaGaaT22A.2.5.20.003145
ORF1ab/nsp31211K1211NaaGaaT22AY.10.000791
ORF1ab/nsp31211K1211NaaGaaT22AY.120.2.10.000997
ORF1ab/nsp31211K1211NaaGaaT22AY.130.000322
ORF1ab/nsp31211K1211NaaGaaT22AY.160.000759
ORF1ab/nsp31211K1211NaaGaaT22AY.16.10.00094
ORF1ab/nsp31211K1211NaaGaaT22AY.39.10.000079
ORF1ab/nsp31211K1211NaaGaaT22AY.4.40.000818
ORF1ab/nsp31211K1211NaaGaaT12AY.46.20.000635
ORF1ab/nsp31211K1211NaaGaaC12AY.46.20.000635
ORF1ab/nsp31211K1211NaaGaaT22AY.690.000373
ORF1ab/nsp31211K1211NaaGaaT22AY.7.20.001119
ORF1ab/nsp31211K1211NaaGaaT22AY.740.000231
ORF1ab/nsp31211K1211NaaGaaT22AY.75.10.000361
ORF1ab/nsp31211K1211NaaGaaT22AY.810.003984
ORF1ab/nsp31211K1211NaaGaaT22AY.850.000854
ORF1ab/nsp31211K1211NaaGaaT22AY.90.000135
ORF1ab/nsp31211K1211NaaGaaT22AY.920.000575
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.10.000653
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.100.00223
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.1590.009346
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.250.001137
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3520.0625
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3780.014599
ORF1ab/nsp31211K1211NaaGaaT22B.1.1280.001271
ORF1ab/nsp31211K1211NaaGaaT22B.1.177.100.001756
ORF1ab/nsp31211K1211NaaGaaT22B.1.177.730.001133
ORF1ab/nsp31211K1211NaaGaaT22B.1.2400.000431
ORF1ab/nsp31211K1211NaaGaaT22B.1.258.170.000208
ORF1ab/nsp31211K1211NaaGaaT22B.1.36.170.000988
ORF1ab/nsp31211K1211NaaGaaT22B.1.36.380.003284
ORF1ab/nsp31211K1211NaaGaaT22B.1.3960.001411
ORF1ab/nsp31211K1211NaaGaaT22B.1.4700.002809
ORF1ab/nsp31211K1211NaaGaaT22B.1.6280.000705
ORF1ab/nsp31211K1211NaaGaaT22C.360.001821
ORF1ab/nsp31211K1211NaaGaaT22P.1.20.002312
ORF1ab/nsp31211K1211NaaGaaT22P.40.007605
ORF1ab/nsp31211K1211NaaGaaT11A.20.000662
ORF1ab/nsp31211K1211NaaGaaT11A.23.10.000704
ORF1ab/nsp31211K1211NaaGaaT11A.270.001656
ORF1ab/nsp31211K1211NaaGaaT11AD.20.000219
ORF1ab/nsp31211K1211NaaGaaT11AY.1010.00049
ORF1ab/nsp31211K1211NaaGaaT11AY.1050.000643
ORF1ab/nsp31211K1211NaaGaaT11AY.1140.000231
ORF1ab/nsp31211K1211NaaGaaT11AY.210.001898
ORF1ab/nsp31211K1211NaaGaaT11AY.320.000532
ORF1ab/nsp31211K1211NaaGaaT11AY.350.000233
ORF1ab/nsp31211K1211NaaGaaT11AY.380.000499
ORF1ab/nsp31211K1211NaaGaaT11AY.46.40.000165
ORF1ab/nsp31211K1211NaaGaaT11AY.46.50.000198
ORF1ab/nsp31211K1211NaaGaaT11AY.490.003195
ORF1ab/nsp31211K1211NaaGaaT11AY.510.000909
ORF1ab/nsp31211K1211NaaGaaT11AY.540.000095
ORF1ab/nsp31211K1211NaaGaaT11AY.550.000917
ORF1ab/nsp31211K1211NaaGaaT11AY.630.000387
ORF1ab/nsp31211K1211NaaGaaT11AY.790.001211
ORF1ab/nsp31211K1211NaaGaaT11AY.840.000437
ORF1ab/nsp31211K1211NaaGaaT11AY.950.000761
ORF1ab/nsp31211K1211NaaGaaT11AY.990.001049
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1210.002427
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1340.011364
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.160.055556
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1890.001513
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2290.005747
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2410.00207
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2940.001266
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3070.002532
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3260.001761
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3540.004386
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3970.002252
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.4380.05
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.4420.018519
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.700.000341
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.980.018519
ORF1ab/nsp31211K1211NaaGaaT11B.1.1310.008772
ORF1ab/nsp31211K1211NaaGaaT11B.1.160.280.002924
ORF1ab/nsp31211K1211NaaGaaT11B.1.1640.014925
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.120.000152
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.410.0025
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.600.000218
ORF1ab/nsp31211K1211NaaGaaT11B.1.2100.002132
ORF1ab/nsp31211K1211NaaGaaT11B.1.214.20.0006
ORF1ab/nsp31211K1211NaaGaaT11B.1.2320.000537
ORF1ab/nsp31211K1211NaaGaaT11B.1.2340.000132
ORF1ab/nsp31211K1211NaaGaaT11B.1.2470.014925
ORF1ab/nsp31211K1211NaaGaaT11B.1.2600.003344
ORF1ab/nsp31211K1211NaaGaaT11B.1.2770.02381
ORF1ab/nsp31211K1211NaaGaaT11B.1.2980.002114
ORF1ab/nsp31211K1211NaaGaaT11B.1.3050.002151
ORF1ab/nsp31211K1211NaaGaaT11B.1.3090.047619
ORF1ab/nsp31211K1211NaaGaaT11B.1.3130.006579
ORF1ab/nsp31211K1211NaaGaaT11B.1.3490.000715
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.20.000303
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.30.000876
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.50.0006
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.10.00114
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.180.00042
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.240.006173
ORF1ab/nsp31211K1211NaaGaaC11B.1.36.270.000763
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.70.004
ORF1ab/nsp31211K1211NaaGaaT11B.1.3780.006849
ORF1ab/nsp31211K1211NaaGaaT11B.1.3810.007812
ORF1ab/nsp31211K1211NaaGaaT11B.1.3980.002976
ORF1ab/nsp31211K1211NaaGaaT11B.1.4000.000429
ORF1ab/nsp31211K1211NaaGaaT11B.1.4240.008065
ORF1ab/nsp31211K1211NaaGaaT11B.1.4250.002994
ORF1ab/nsp31211K1211NaaGaaT11B.1.4560.003268
ORF1ab/nsp31211K1211NaaGaaT11B.1.4680.005714
ORF1ab/nsp31211K1211NaaGaaT11B.1.4690.00361
ORF1ab/nsp31211K1211NaaGaaT11B.1.5030.002488
ORF1ab/nsp31211K1211NaaGaaT11B.1.5300.007143
ORF1ab/nsp31211K1211NaaGaaT11B.1.5600.00463
ORF1ab/nsp31211K1211NaaGaaT11B.1.5610.000397
ORF1ab/nsp31211K1211NaaGaaT11B.1.5640.000426
ORF1ab/nsp31211K1211NaaGaaT11B.1.5670.003333
ORF1ab/nsp31211K1211NaaGaaT11B.1.5770.000687
ORF1ab/nsp31211K1211NaaGaaT11B.1.5820.000491
ORF1ab/nsp31211K1211NaaGaaT11B.1.596.10.009346
ORF1ab/nsp31211K1211NaaGaaT11B.1.6180.004032
ORF1ab/nsp31211K1211NaaGaaT11B.1.6200.000946
ORF1ab/nsp31211K1211NaaGaaT11B.1.6250.002353
ORF1ab/nsp31211K1211NaaGaaT11B.1.9.50.005682
ORF1ab/nsp31211K1211NaaGaaT11B.110.005128
ORF1ab/nsp31211K1211NaaGaaT11B.4.50.011905
ORF1ab/nsp31211K1211NaaGaaT11B.400.000364
ORF1ab/nsp31211K1211NaaGaaT11B.60.00091
ORF1ab/nsp31211K1211NaaGaaT11C.170.055556
ORF1ab/nsp31211K1211NaaGaaC11C.36.10.004149
ORF1ab/nsp31211K1211NaaGaaT11C.36.20.034483
ORF1ab/nsp31211K1211NaaGaaT11K.10.02381
ORF1ab/nsp31211K1211NaaGaaT11N.100.029412
ORF1ab/nsp31211K1211NaaGaaT11P.1.10.000318
ORF1ab/nsp31211K1211NaaGaaT11P.1.120.000484
ORF1ab/nsp31211K1211NaaGaaT11P.1.70.000319
ORF1ab/nsp31211K1211NaaGaaT11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.