CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = K1077N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31077K1077NK1895NnonsynaaGaaT507049860.9834325948-5950
ORF1ab/nsp31077K1077NK1895NnonsynaaGaaC5070840.0165685948-5950

Details of the mutation K1077N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31077K1077NaaGaaT49865070All0.000954
ORF1ab/nsp31077K1077NaaGaaC845070All0.000016
ORF1ab/nsp31077K1077NaaGaaT11381138C.350.880805
ORF1ab/nsp31077K1077NaaGaaT845845B.1.1.700.288199
ORF1ab/nsp31077K1077NaaGaaT517517B.1.2580.034405
ORF1ab/nsp31077K1077NaaGaaT283357B.1.1.70.000253
ORF1ab/nsp31077K1077NaaGaaC74357B.1.1.70.000066
ORF1ab/nsp31077K1077NaaGaaT292292B.1.1770.003845
ORF1ab/nsp31077K1077NaaGaaT255258B.10.002336
ORF1ab/nsp31077K1077NaaGaaC3258B.10.000027
ORF1ab/nsp31077K1077NaaGaaT182182B.1.617.20.000685
ORF1ab/nsp31077K1077NaaGaaT8585AY.9.20.003122
ORF1ab/nsp31077K1077NaaGaaT8484AY.40.000131
ORF1ab/nsp31077K1077NaaGaaT8383AY.60.003414
ORF1ab/nsp31077K1077NaaGaaT7777B.1.6210.006816
ORF1ab/nsp31077K1077NaaGaaT6868B.1.1.1111
ORF1ab/nsp31077K1077NaaGaaT6262B.1.1.500.042091
ORF1ab/nsp31077K1077NaaGaaT6262B.1.20.000546
ORF1ab/nsp31077K1077NaaGaaT5353AY.430.000235
ORF1ab/nsp31077K1077NaaGaaT5252B.1.2340.006861
ORF1ab/nsp31077K1077NaaGaaT5151B.1.177.750.05307
ORF1ab/nsp31077K1077NaaGaaT4649AY.1030.000286
ORF1ab/nsp31077K1077NaaGaaC349AY.1030.000019
ORF1ab/nsp31077K1077NaaGaaT4242B.1.5960.00366
ORF1ab/nsp31077K1077NaaGaaT3939AY.200.001516
ORF1ab/nsp31077K1077NaaGaaT3939AY.30.000388
ORF1ab/nsp31077K1077NaaGaaT3131AY.250.000186
ORF1ab/nsp31077K1077NaaGaaT2727AY.1020.000716
ORF1ab/nsp31077K1077NaaGaaT2727B.1.10.00049
ORF1ab/nsp31077K1077NaaGaaT2121B.1.4290.000494
ORF1ab/nsp31077K1077NaaGaaT2020P.10.000315
ORF1ab/nsp31077K1077NaaGaaT1919B.1.2210.00135
ORF1ab/nsp31077K1077NaaGaaT1919B.1.360.002772
ORF1ab/nsp31077K1077NaaGaaT1717AY.980.001343
ORF1ab/nsp31077K1077NaaGaaT1717B.1.1600.00053
ORF1ab/nsp31077K1077NaaGaaT1616AY.1200.000595
ORF1ab/nsp31077K1077NaaGaaT1515B.1.5260.000353
ORF1ab/nsp31077K1077NaaGaaT1414AY.440.000085
ORF1ab/nsp31077K1077NaaGaaT1313B.1.1.4590.2
ORF1ab/nsp31077K1077NaaGaaT1212B.1.1.3720.008264
ORF1ab/nsp31077K1077NaaGaaT1111B.1.1.5190.000437
ORF1ab/nsp31077K1077NaaGaaT1010B.1.1.250.005685
ORF1ab/nsp31077K1077NaaGaaT1010B.1.258.240.107527
ORF1ab/nsp31077K1077NaaGaaT99AY.3.10.000767
ORF1ab/nsp31077K1077NaaGaaT99AY.4.50.000967
ORF1ab/nsp31077K1077NaaGaaT99B.1.1.10.00294
ORF1ab/nsp31077K1077NaaGaaT99P.1.150.002091
ORF1ab/nsp31077K1077NaaGaaT88AY.290.000126
ORF1ab/nsp31077K1077NaaGaaT88B.1.160.320.034335
ORF1ab/nsp31077K1077NaaGaaT77AY.360.001037
ORF1ab/nsp31077K1077NaaGaaT77B.1.177.440.003633
ORF1ab/nsp31077K1077NaaGaaT66AY.260.00017
ORF1ab/nsp31077K1077NaaGaaT66AY.610.000629
ORF1ab/nsp31077K1077NaaGaaT66B.1.5510.007742
ORF1ab/nsp31077K1077NaaGaaT66B.1.6280.002114
ORF1ab/nsp31077K1077NaaGaaT55AY.330.000334
ORF1ab/nsp31077K1077NaaGaaT55AY.620.002179
ORF1ab/nsp31077K1077NaaGaaT55AY.750.00028
ORF1ab/nsp31077K1077NaaGaaT55AY.910.003652
ORF1ab/nsp31077K1077NaaGaaT55AY.98.10.000242
ORF1ab/nsp31077K1077NaaGaaT55B.1.1.3680.015432
ORF1ab/nsp31077K1077NaaGaaT55B.1.1.4480.010163
ORF1ab/nsp31077K1077NaaGaaT55B.1.258.140.004902
ORF1ab/nsp31077K1077NaaGaaT55Q.30.000725
ORF1ab/nsp31077K1077NaaGaaT44AY.270.000259
ORF1ab/nsp31077K1077NaaGaaT44AY.390.000099
ORF1ab/nsp31077K1077NaaGaaT44B.1.1.330.001684
ORF1ab/nsp31077K1077NaaGaaT44B.1.2430.000278
ORF1ab/nsp31077K1077NaaGaaT44B.1.258.170.000416
ORF1ab/nsp31077K1077NaaGaaT44B.1.3690.001141
ORF1ab/nsp31077K1077NaaGaaT44C.36.30.002269
ORF1ab/nsp31077K1077NaaGaaT23AY.1130.000285
ORF1ab/nsp31077K1077NaaGaaC13AY.1130.000142
ORF1ab/nsp31077K1077NaaGaaT33AY.130.000483
ORF1ab/nsp31077K1077NaaGaaT33AY.450.000365
ORF1ab/nsp31077K1077NaaGaaT33AY.460.000312
ORF1ab/nsp31077K1077NaaGaaT33AY.470.000093
ORF1ab/nsp31077K1077NaaGaaT33AY.740.000347
ORF1ab/nsp31077K1077NaaGaaT33AY.940.001328
ORF1ab/nsp31077K1077NaaGaaT33B.1.1.2220.000612
ORF1ab/nsp31077K1077NaaGaaT33B.1.3510.000089
ORF1ab/nsp31077K1077NaaGaaT33B.1.36.170.001482
ORF1ab/nsp31077K1077NaaGaaT33B.1.466.20.001174
ORF1ab/nsp31077K1077NaaGaaT33C.370.000348
ORF1ab/nsp31077K1077NaaGaaT33P.1.140.000143
ORF1ab/nsp31077K1077NaaGaaT33P.1.40.00293
ORF1ab/nsp31077K1077NaaGaaT22AY.1180.000125
ORF1ab/nsp31077K1077NaaGaaT22AY.120.20.002571
ORF1ab/nsp31077K1077NaaGaaT22AY.140.000176
ORF1ab/nsp31077K1077NaaGaaT22AY.230.000139
ORF1ab/nsp31077K1077NaaGaaT22AY.46.60.000144
ORF1ab/nsp31077K1077NaaGaaT22AY.75.10.000361
ORF1ab/nsp31077K1077NaaGaaT22AZ.10.001735
ORF1ab/nsp31077K1077NaaGaaT22B0.000256
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.1700.002494
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.280.000622
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.4110.029412
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.570.022989
ORF1ab/nsp31077K1077NaaGaaT22B.1.110.30.001437
ORF1ab/nsp31077K1077NaaGaaT22B.1.177.860.000367
ORF1ab/nsp31077K1077NaaGaaT22B.1.3960.001411
ORF1ab/nsp31077K1077NaaGaaT22B.1.4080.00738
ORF1ab/nsp31077K1077NaaGaaT22B.1.4650.007605
ORF1ab/nsp31077K1077NaaGaaT22B.1.564.10.003155
ORF1ab/nsp31077K1077NaaGaaT22B.40.004415
ORF1ab/nsp31077K1077NaaGaaT22D.20.00015
ORF1ab/nsp31077K1077NaaGaaT22P.20.000373
ORF1ab/nsp31077K1077NaaGaaC22Q.80.00033
ORF1ab/nsp31077K1077NaaGaaT11A.2.40.003367
ORF1ab/nsp31077K1077NaaGaaT11A.23.10.000704
ORF1ab/nsp31077K1077NaaGaaT11AD.20.000219
ORF1ab/nsp31077K1077NaaGaaT11AE.30.032258
ORF1ab/nsp31077K1077NaaGaaT11AU.20.002421
ORF1ab/nsp31077K1077NaaGaaT11AY.1170.000085
ORF1ab/nsp31077K1077NaaGaaT11AY.1190.000035
ORF1ab/nsp31077K1077NaaGaaT11AY.120.000316
ORF1ab/nsp31077K1077NaaGaaT11AY.120.2.10.000498
ORF1ab/nsp31077K1077NaaGaaT11AY.1210.000135
ORF1ab/nsp31077K1077NaaGaaT11AY.160.00038
ORF1ab/nsp31077K1077NaaGaaT11AY.340.000097
ORF1ab/nsp31077K1077NaaGaaT11AY.4.20.000022
ORF1ab/nsp31077K1077NaaGaaT11AY.400.000964
ORF1ab/nsp31077K1077NaaGaaT11AY.420.00004
ORF1ab/nsp31077K1077NaaGaaT11AY.46.10.001027
ORF1ab/nsp31077K1077NaaGaaT11AY.50.000021
ORF1ab/nsp31077K1077NaaGaaT11AY.5.30.000337
ORF1ab/nsp31077K1077NaaGaaT11AY.510.000909
ORF1ab/nsp31077K1077NaaGaaT11AY.540.000095
ORF1ab/nsp31077K1077NaaGaaT11AY.590.00053
ORF1ab/nsp31077K1077NaaGaaT11AY.650.000533
ORF1ab/nsp31077K1077NaaGaaT11AY.660.00107
ORF1ab/nsp31077K1077NaaGaaT11AY.800.001129
ORF1ab/nsp31077K1077NaaGaaT11AY.90.000068
ORF1ab/nsp31077K1077NaaGaaT11AY.990.001049
ORF1ab/nsp31077K1077NaaGaaT11AZ.50.003509
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.1530.001095
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.1890.001513
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2070.001182
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2140.000055
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2980.000862
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.3170.000412
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.3180.000302
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.390.00051
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.4190.007407
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.470.005348
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.630.000386
ORF1ab/nsp31077K1077NaaGaaT11B.1.1110.001175
ORF1ab/nsp31077K1077NaaGaaT11B.1.130.002375
ORF1ab/nsp31077K1077NaaGaaT11B.1.1460.004237
ORF1ab/nsp31077K1077NaaGaaT11B.1.160.140.002119
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.350.000691
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.430.001477
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.600.000218
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.730.000566
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.810.000189
ORF1ab/nsp31077K1077NaaGaaT11B.1.2140.003663
ORF1ab/nsp31077K1077NaaGaaT11B.1.2220.001692
ORF1ab/nsp31077K1077NaaGaaT11B.1.2400.000216
ORF1ab/nsp31077K1077NaaGaaT11B.1.258.110.000396
ORF1ab/nsp31077K1077NaaGaaT11B.1.258.210.007752
ORF1ab/nsp31077K1077NaaGaaT11B.1.2790.000514
ORF1ab/nsp31077K1077NaaGaaT11B.1.3240.001605
ORF1ab/nsp31077K1077NaaGaaT11B.1.36.310.001751
ORF1ab/nsp31077K1077NaaGaaT11B.1.36.380.001642
ORF1ab/nsp31077K1077NaaGaaT11B.1.3670.000792
ORF1ab/nsp31077K1077NaaGaaT11B.1.3990.001934
ORF1ab/nsp31077K1077NaaGaaT11B.1.4270.00005
ORF1ab/nsp31077K1077NaaGaaT11B.1.4370.020833
ORF1ab/nsp31077K1077NaaGaaT11B.1.438.10.000107
ORF1ab/nsp31077K1077NaaGaaT11B.1.4560.003268
ORF1ab/nsp31077K1077NaaGaaT11B.1.4730.019231
ORF1ab/nsp31077K1077NaaGaaT11B.1.4800.002488
ORF1ab/nsp31077K1077NaaGaaT11B.1.4970.000315
ORF1ab/nsp31077K1077NaaGaaT11B.1.4990.00105
ORF1ab/nsp31077K1077NaaGaaT11B.1.5240.001406
ORF1ab/nsp31077K1077NaaGaaT11B.1.5250.000113
ORF1ab/nsp31077K1077NaaGaaT11B.1.5270.003704
ORF1ab/nsp31077K1077NaaGaaT11B.1.5380.008065
ORF1ab/nsp31077K1077NaaGaaT11B.1.5400.009709
ORF1ab/nsp31077K1077NaaGaaT11B.1.5440.006024
ORF1ab/nsp31077K1077NaaGaaT11B.1.5600.00463
ORF1ab/nsp31077K1077NaaGaaT11B.1.5610.000397
ORF1ab/nsp31077K1077NaaGaaC11B.1.5760.000907
ORF1ab/nsp31077K1077NaaGaaT11B.1.6090.000479
ORF1ab/nsp31077K1077NaaGaaT11B.1.617.10.000129
ORF1ab/nsp31077K1077NaaGaaT11B.1.6260.005714
ORF1ab/nsp31077K1077NaaGaaT11B.1.6330.041667
ORF1ab/nsp31077K1077NaaGaaT11B.380.02381
ORF1ab/nsp31077K1077NaaGaaT11C.260.007353
ORF1ab/nsp31077K1077NaaGaaT11K.10.02381
ORF1ab/nsp31077K1077NaaGaaT11P.1.120.000484
ORF1ab/nsp31077K1077NaaGaaT11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.