CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = I707V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3707I707VI1525VnonsynAtaGta6217621714838-4840

Details of the mutation I707V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3707I707VAtaGta62176217All0.001189
ORF1ab/nsp3707I707VAtaGta51615161AY.690.963412
ORF1ab/nsp3707I707VAtaGta191191AY.40.000297
ORF1ab/nsp3707I707VAtaGta162162B.1.1.70.000145
ORF1ab/nsp3707I707VAtaGta8181AY.130.013039
ORF1ab/nsp3707I707VAtaGta5959AY.440.000359
ORF1ab/nsp3707I707VAtaGta5252B.1.617.20.000196
ORF1ab/nsp3707I707VAtaGta4242B.1.1.2220.008568
ORF1ab/nsp3707I707VAtaGta4040B.1.20.000352
ORF1ab/nsp3707I707VAtaGta3535AY.250.000211
ORF1ab/nsp3707I707VAtaGta3333AY.4.20.000716
ORF1ab/nsp3707I707VAtaGta2828P.1.140.001338
ORF1ab/nsp3707I707VAtaGta2525AY.30.000249
ORF1ab/nsp3707I707VAtaGta2121B.130.954545
ORF1ab/nsp3707I707VAtaGta1919AY.290.0003
ORF1ab/nsp3707I707VAtaGta1919B.10.000174
ORF1ab/nsp3707I707VAtaGta1818B.1.619.10.011546
ORF1ab/nsp3707I707VAtaGta1717AY.430.000075
ORF1ab/nsp3707I707VAtaGta1515AY.1030.000093
ORF1ab/nsp3707I707VAtaGta1414B.1.4290.000329
ORF1ab/nsp3707I707VAtaGta1111AY.260.000311
ORF1ab/nsp3707I707VAtaGta1111B.1.177.860.002018
ORF1ab/nsp3707I707VAtaGta1010P.10.000158
ORF1ab/nsp3707I707VAtaGta99B.1.360.001313
ORF1ab/nsp3707I707VAtaGta88B.1.1770.000105
ORF1ab/nsp3707I707VAtaGta77AY.1020.000186
ORF1ab/nsp3707I707VAtaGta66AY.390.000148
ORF1ab/nsp3707I707VAtaGta66B.1.10.000109
ORF1ab/nsp3707I707VAtaGta55B.1.9.20.5
ORF1ab/nsp3707I707VAtaGta44AY.1000.000184
ORF1ab/nsp3707I707VAtaGta44AY.200.000155
ORF1ab/nsp3707I707VAtaGta44AY.460.000416
ORF1ab/nsp3707I707VAtaGta44B.1.177.670.030534
ORF1ab/nsp3707I707VAtaGta44B.1.5260.000094
ORF1ab/nsp3707I707VAtaGta33AY.330.0002
ORF1ab/nsp3707I707VAtaGta33AY.46.30.002801
ORF1ab/nsp3707I707VAtaGta33AY.470.000093
ORF1ab/nsp3707I707VAtaGta33AY.60.000123
ORF1ab/nsp3707I707VAtaGta33B.1.177.150.001893
ORF1ab/nsp3707I707VAtaGta33B.1.2430.000209
ORF1ab/nsp3707I707VAtaGta33B.1.3510.000089
ORF1ab/nsp3707I707VAtaGta33C.36.30.001702
ORF1ab/nsp3707I707VAtaGta22AY.1060.00067
ORF1ab/nsp3707I707VAtaGta22AY.39.10.000079
ORF1ab/nsp3707I707VAtaGta22AY.4.50.000215
ORF1ab/nsp3707I707VAtaGta22AY.420.00008
ORF1ab/nsp3707I707VAtaGta22AY.50.000041
ORF1ab/nsp3707I707VAtaGta22AY.610.00021
ORF1ab/nsp3707I707VAtaGta22AY.99.10.003106
ORF1ab/nsp3707I707VAtaGta22AY.99.20.000184
ORF1ab/nsp3707I707VAtaGta22B.1.1.5190.000079
ORF1ab/nsp3707I707VAtaGta22B.1.177.320.002699
ORF1ab/nsp3707I707VAtaGta22B.1.177.790.004684
ORF1ab/nsp3707I707VAtaGta22B.1.2210.000142
ORF1ab/nsp3707I707VAtaGta22B.1.3610.002577
ORF1ab/nsp3707I707VAtaGta22B.1.4270.000101
ORF1ab/nsp3707I707VAtaGta22B.1.6190.001742
ORF1ab/nsp3707I707VAtaGta22B.1.6370.000146
ORF1ab/nsp3707I707VAtaGta22D.20.00015
ORF1ab/nsp3707I707VAtaGta11AY.116.10.000311
ORF1ab/nsp3707I707VAtaGta11AY.1170.000085
ORF1ab/nsp3707I707VAtaGta11AY.1200.000037
ORF1ab/nsp3707I707VAtaGta11AY.3.10.000085
ORF1ab/nsp3707I707VAtaGta11AY.340.000097
ORF1ab/nsp3707I707VAtaGta11AY.360.000148
ORF1ab/nsp3707I707VAtaGta11AY.380.000499
ORF1ab/nsp3707I707VAtaGta11AY.4.10.000737
ORF1ab/nsp3707I707VAtaGta11AY.46.20.000635
ORF1ab/nsp3707I707VAtaGta11AY.490.003195
ORF1ab/nsp3707I707VAtaGta11AY.5.40.000277
ORF1ab/nsp3707I707VAtaGta11AY.540.000095
ORF1ab/nsp3707I707VAtaGta11AY.550.000917
ORF1ab/nsp3707I707VAtaGta11AY.70.000196
ORF1ab/nsp3707I707VAtaGta11AY.720.001361
ORF1ab/nsp3707I707VAtaGta11AY.750.000056
ORF1ab/nsp3707I707VAtaGta11AY.760.004831
ORF1ab/nsp3707I707VAtaGta11AY.980.000079
ORF1ab/nsp3707I707VAtaGta11B0.000128
ORF1ab/nsp3707I707VAtaGta11B.1.1.100.001115
ORF1ab/nsp3707I707VAtaGta11B.1.1.4160.000905
ORF1ab/nsp3707I707VAtaGta11B.1.177.160.000664
ORF1ab/nsp3707I707VAtaGta11B.1.177.570.000281
ORF1ab/nsp3707I707VAtaGta11B.1.177.730.000566
ORF1ab/nsp3707I707VAtaGta11B.1.214.20.0006
ORF1ab/nsp3707I707VAtaGta11B.1.2400.000216
ORF1ab/nsp3707I707VAtaGta11B.1.36.190.009259
ORF1ab/nsp3707I707VAtaGta11B.1.36.260.002857
ORF1ab/nsp3707I707VAtaGta11B.1.36.290.000517
ORF1ab/nsp3707I707VAtaGta11B.1.4160.001269
ORF1ab/nsp3707I707VAtaGta11B.1.416.10.001563
ORF1ab/nsp3707I707VAtaGta11B.1.5960.000087
ORF1ab/nsp3707I707VAtaGta11B.6.60.000889
ORF1ab/nsp3707I707VAtaGta11N.40.004255

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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