CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = I1239del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31239I1239del1I2057del1delatAat-850.6256434-6436
ORF1ab/nsp31239I1239del1I2057del1delaTAaC-810.1256434-6436
ORF1ab/nsp31239I1239del1I2057del1delAta-ta810.1256434-6436
ORF1ab/nsp31239I1239del1I2057del1delaTaa-a810.1256434-6436

Details of the mutation I1239del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31239I1239del1atAat-58All0.000001
ORF1ab/nsp31239I1239del1aTAaC-18All0
ORF1ab/nsp31239I1239del1Ata-ta18All0
ORF1ab/nsp31239I1239del1aTaa-a18All0
ORF1ab/nsp31239I1239del1aTAaC-13B.10.000009
ORF1ab/nsp31239I1239del1Ata-ta13B.10.000009
ORF1ab/nsp31239I1239del1atAat-13B.10.000009
ORF1ab/nsp31239I1239del1atAat-22B.1.1.70.000002
ORF1ab/nsp31239I1239del1atAat-11AY.430.000004
ORF1ab/nsp31239I1239del1aTaa-a11B.1.20.000009
ORF1ab/nsp31239I1239del1atAat-11C.350.000774