CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = I1239del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31239I1239delI2057deldelATA---56956916434-6436

Details of the mutation I1239del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31239I1239delATA---569569All0.000109
ORF1ab/nsp31239I1239delATA---525525L.11
ORF1ab/nsp31239I1239delATA---66B.1.1.100.006689
ORF1ab/nsp31239I1239delATA---44B.1.1.5190.000159
ORF1ab/nsp31239I1239delATA---44B.1.1.70.000004
ORF1ab/nsp31239I1239delATA---33AY.250.000018
ORF1ab/nsp31239I1239delATA---33AY.40.000005
ORF1ab/nsp31239I1239delATA---22AY.1030.000012
ORF1ab/nsp31239I1239delATA---22AY.430.000009
ORF1ab/nsp31239I1239delATA---22AY.540.000191
ORF1ab/nsp31239I1239delATA---22B.1.10.000036
ORF1ab/nsp31239I1239delATA---22B.1.20.000018
ORF1ab/nsp31239I1239delATA---11AY.30.00001
ORF1ab/nsp31239I1239delATA---11AY.4.50.000107
ORF1ab/nsp31239I1239delATA---11AY.660.00107
ORF1ab/nsp31239I1239delATA---11AY.98.10.000048
ORF1ab/nsp31239I1239delATA---11AY.990.001049
ORF1ab/nsp31239I1239delATA---11B.10.000009
ORF1ab/nsp31239I1239delATA---11B.1.1.1330.008475
ORF1ab/nsp31239I1239delATA---11B.1.1.3480.000796
ORF1ab/nsp31239I1239delATA---11B.1.177.620.001192
ORF1ab/nsp31239I1239delATA---11B.1.177.830.001481
ORF1ab/nsp31239I1239delATA---11B.1.2580.000067
ORF1ab/nsp31239I1239delATA---11B.1.617.20.000004
ORF1ab/nsp31239I1239delATA---11B.1.6370.000073
ORF1ab/nsp31239I1239delATA---11P.10.000016