CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = I1239L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31239I1239LI2057LnonsynAtaTta1771680.9491536434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtaCta17770.0395486434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtACtC17710.005649726434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtACtG17710.005649726434-6436

Details of the mutation I1239L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31239I1239LAtaTta168177All0.000032
ORF1ab/nsp31239I1239LAtaCta7177All0.000001
ORF1ab/nsp31239I1239LAtACtG1177All0
ORF1ab/nsp31239I1239LAtACtC1177All0
ORF1ab/nsp31239I1239LAtaTta6262B.1.4290.001459
ORF1ab/nsp31239I1239LAtaTta5555B.1.6370.004019
ORF1ab/nsp31239I1239LAtaTta2222B.1.1.70.00002
ORF1ab/nsp31239I1239LAtaTta44B.10.000037
ORF1ab/nsp31239I1239LAtaTta44B.1.1770.000053
ORF1ab/nsp31239I1239LAtaTta44B.1.3110.001098
ORF1ab/nsp31239I1239LAtaTta33AD.20.000657
ORF1ab/nsp31239I1239LAtaCta33AY.40.000005
ORF1ab/nsp31239I1239LAtaTta22AY.250.000012
ORF1ab/nsp31239I1239LAtACtG12AY.390.000025
ORF1ab/nsp31239I1239LAtACtC12AY.390.000025
ORF1ab/nsp31239I1239LAtaTta22B.1.617.20.000008
ORF1ab/nsp31239I1239LAtaTta11A.2.50.000499
ORF1ab/nsp31239I1239LAtaTta11AY.1020.000027
ORF1ab/nsp31239I1239LAtaTta11AY.330.000067
ORF1ab/nsp31239I1239LAtaTta11AY.4.20.000022
ORF1ab/nsp31239I1239LAtaTta11AY.430.000004
ORF1ab/nsp31239I1239LAtaCta11AY.620.000436
ORF1ab/nsp31239I1239LAtaCta11AY.9.20.000037
ORF1ab/nsp31239I1239LAtaTta11B0.000128
ORF1ab/nsp31239I1239LAtaTta11B.1.10.000018
ORF1ab/nsp31239I1239LAtaTta11B.1.5960.000087
ORF1ab/nsp31239I1239LAtaCta11C.370.000116
ORF1ab/nsp31239I1239LAtaCta11D.20.000075
ORF1ab/nsp31239I1239LAtaTta11P.10.000016
ORF1ab/nsp31239I1239LAtaTta11Q.80.000165