CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1192 | I1192T | I2010T | nonsyn | aTa | aCa | 1864 | 1864 | 1 | 6293-6295 |
Details of the mutation I1192T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1864 | 1864 | All | 0.000357 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1001 | 1001 | AY.103 | 0.006215 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 169 | 169 | AY.4 | 0.000263 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 154 | 154 | B.1.617.2 | 0.00058 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 138 | 138 | B.1.182 | 1 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 90 | 90 | B.1.1.7 | 0.000081 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 22 | 22 | B.1.1.231 | 0.068111 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 16 | 16 | AY.54 | 0.001526 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 15 | 15 | B.1.258.11 | 0.005945 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | B.1.1.294 | 0.010127 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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