CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 682 | H682Y | H1500Y | nonsyn | Cat | Tat | 2613 | 2609 | 0.998469 | 4763-4765 |
ORF1ab/nsp3 | 682 | H682Y | H1500Y | nonsyn | CaT | TaC | 2613 | 4 | 0.00153081 | 4763-4765 |
Details of the mutation H682Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2609 | 2613 | All | 0.000499 |
ORF1ab/nsp3 | 682 | H682Y | CaT | TaC | 4 | 2613 | All | 0.000001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 596 | 596 | B.1.1.7 | 0.000534 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 176 | 176 | B.1.617.2 | 0.000663 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 123 | 123 | AY.3 | 0.001223 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 118 | 118 | AY.121 | 0.015968 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 115 | 115 | AY.33 | 0.007679 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 113 | 113 | AY.103 | 0.000702 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 111 | 111 | C.38 | 0.895161 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 99 | 99 | B.1.160 | 0.003088 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 97 | 97 | AY.44 | 0.00059 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 88 | 88 | AY.25 | 0.000529 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 87 | 87 | AY.29 | 0.001372 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 68 | 68 | B.1.243.2 | 0.985507 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 56 | 56 | B.1.1 | 0.001016 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 47 | 47 | B.1.637 | 0.003434 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 44 | 44 | AY.4 | 0.000068 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 39 | 39 | AY.20 | 0.001516 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 36 | 36 | AY.34 | 0.003491 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 34 | 34 | AY.61 | 0.003562 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 34 | 34 | AY.98 | 0.002686 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 22 | 22 | C.39 | 0.415094 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 19 | 19 | B.1.1.189 | 0.028744 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 11 | 11 | B.1.1.329 | 0.042308 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | AY.73 | 0.004657 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | AY.66 | 0.006417 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.160.22 | 0.040541 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 682 | H682Y | CaT | TaC | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.18 | 0.020202 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.229 | 0.011494 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.244 | 0.030769 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | AZ.4 | 0.003356 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 682 | H682Y | Cat | Tat | 1 | 1 | Q.1 | 0.000126 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|