CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 446 | H446H | H1264H | syn | caT | caC | 2380 | 2380 | 1 | 4055-4057 |
Details of the mutation H446H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2380 | 2380 | All | 0.000455 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1257 | 1257 | AY.4 | 0.001956 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 463 | 463 | B.1.36.21 | 1 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 165 | 165 | AY.103 | 0.001024 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 131 | 131 | B.1.1.7 | 0.000117 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 56 | 56 | AY.25 | 0.000337 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 10 | 10 | A.21 | 0.027701 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | B.1.426 | 0.004036 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.258.22 | 0.008 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.636 | 0.020134 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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