CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = H1539del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31539H1539del1H2357del1delcaTca-760.8571437334-7336
ORF1ab/nsp31539H1539del1H2357del1delCat-at710.1428577334-7336

Details of the mutation H1539del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31539H1539del1caTca-67All0.000001
ORF1ab/nsp31539H1539del1Cat-at17All0
ORF1ab/nsp31539H1539del1caTca-11AY.1200.000037
ORF1ab/nsp31539H1539del1caTca-11AY.430.000004
ORF1ab/nsp31539H1539del1Cat-at11B.1.1.3060.000438
ORF1ab/nsp31539H1539del1caTca-11B.1.36.100.004785
ORF1ab/nsp31539H1539del1caTca-11B.1.5760.000907
ORF1ab/nsp31539H1539del1caTca-11B.1.5960.000087
ORF1ab/nsp31539H1539del1caTca-11P.1.120.000484