CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = H1539R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31539H1539RH2357RnonsyncAtcGt57560.9824567334-7336
ORF1ab/nsp31539H1539RH2357RnonsynCATAGG5710.01754397334-7336

Details of the mutation H1539R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31539H1539RcAtcGt5657All0.000011
ORF1ab/nsp31539H1539RCATAGG157All0
ORF1ab/nsp31539H1539RcAtcGt89B.1.617.20.00003
ORF1ab/nsp31539H1539RCATAGG19B.1.617.20.000004
ORF1ab/nsp31539H1539RcAtcGt77AY.1030.000043
ORF1ab/nsp31539H1539RcAtcGt77AY.40.000011
ORF1ab/nsp31539H1539RcAtcGt77B.1.6370.000512
ORF1ab/nsp31539H1539RcAtcGt66AY.360.000889
ORF1ab/nsp31539H1539RcAtcGt33B.1.1.70.000003
ORF1ab/nsp31539H1539RcAtcGt220.111111
ORF1ab/nsp31539H1539RcAtcGt22AY.4.40.000818
ORF1ab/nsp31539H1539RcAtcGt22AY.50.000041
ORF1ab/nsp31539H1539RcAtcGt11AY.1040.001984
ORF1ab/nsp31539H1539RcAtcGt11AY.1200.000037
ORF1ab/nsp31539H1539RcAtcGt11AY.200.000039
ORF1ab/nsp31539H1539RcAtcGt11AY.290.000016
ORF1ab/nsp31539H1539RcAtcGt11AY.330.000067
ORF1ab/nsp31539H1539RcAtcGt11AY.440.000006
ORF1ab/nsp31539H1539RcAtcGt11AY.710.000475
ORF1ab/nsp31539H1539RcAtcGt11AZ.10.000867
ORF1ab/nsp31539H1539RcAtcGt11B.10.000009
ORF1ab/nsp31539H1539RcAtcGt11B.1.1770.000013
ORF1ab/nsp31539H1539RcAtcGt11B.1.4090.000781
ORF1ab/nsp31539H1539RcAtcGt11P.20.000187