CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = H1539Q

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31539H1539QH2357QnonsyncaTcaA1580.5333337334-7336
ORF1ab/nsp31539H1539QH2357QnonsyncaTcaG1570.4666677334-7336

Details of the mutation H1539Q within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31539H1539QcaTcaA815All0.000002
ORF1ab/nsp31539H1539QcaTcaG715All0.000001
ORF1ab/nsp31539H1539QcaTcaG33AY.1180.000188
ORF1ab/nsp31539H1539QcaTcaA23B.1.617.20.000008
ORF1ab/nsp31539H1539QcaTcaG13B.1.617.20.000004
ORF1ab/nsp31539H1539QcaTcaA22AY.30.00002
ORF1ab/nsp31539H1539QcaTcaA22B.1.1.3720.001377
ORF1ab/nsp31539H1539QcaTcaA11AY.1090.00074
ORF1ab/nsp31539H1539QcaTcaG11AY.430.000004
ORF1ab/nsp31539H1539QcaTcaG11B.1.1.3000.010753
ORF1ab/nsp31539H1539QcaTcaA11B.1.5300.007143
ORF1ab/nsp31539H1539QcaTcaG11P.1.140.000048