CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 954 | G954G | G1772G | syn | ggC | ggT | 12296 | 12042 | 0.979343 | 5579-5581 |
ORF1ab/nsp3 | 954 | G954G | G1772G | syn | ggC | ggA | 12296 | 220 | 0.017892 | 5579-5581 |
ORF1ab/nsp3 | 954 | G954G | G1772G | syn | ggC | ggG | 12296 | 34 | 0.00276513 | 5579-5581 |
Details of the mutation G954G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 12042 | 12296 | All | 0.002303 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 220 | 12296 | All | 0.000042 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 34 | 12296 | All | 0.000007 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 10580 | 10580 | B.1.637 | 0.773109 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 479 | 485 | B.1 | 0.004387 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 5 | 485 | B.1 | 0.000046 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 1 | 485 | B.1 | 0.000009 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 104 | 182 | AY.4 | 0.000162 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 50 | 182 | AY.4 | 0.000078 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 28 | 182 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 95 | 153 | B.1.1.7 | 0.000085 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 57 | 153 | B.1.1.7 | 0.000051 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 1 | 153 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 139 | 139 | AY.3.1 | 0.011851 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 103 | 103 | B.1.1.70 | 0.03513 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 45 | 86 | B.1.177 | 0.000593 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 41 | 86 | B.1.177 | 0.00054 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 51 | 55 | B.1.617.2 | 0.000192 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 4 | 55 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 42 | 42 | B.1.427 | 0.002121 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 30 | 31 | B.1.221 | 0.002131 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 1 | 31 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 27 | 27 | AY.29 | 0.000426 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 18 | 20 | AY.103 | 0.000112 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 2 | 20 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 17 | 18 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 18 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 12 | 14 | AY.118 | 0.000752 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 14 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 14 | 14 | B.1.177.7 | 0.002308 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 11 | 12 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 12 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 12 | 12 | B | 0.001534 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 12 | 12 | B.1.177.6 | 0.011719 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 10 | 10 | AY.79 | 0.012107 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 7 | 8 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 8 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 7 | 7 | B.1.1.368 | 0.021605 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 7 | 7 | B.1.636 | 0.04698 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 4 | 5 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 5 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 5 | 5 | B.1.1.507 | 0.043478 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 4 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 1 | 4 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggG | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 3 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 3 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 2 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 2 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.160.13 | 0.055556 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.413 | 0.008511 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.1.436 | 0.025641 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 954 | G954G | ggC | ggT | 1 | 1 | P.1.1 | 0.000318 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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